View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_low_22 (Length: 238)
Name: NF17512_low_22
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44501796 - 44502018
Alignment:
| Q |
1 |
ttatgttggttaggagattctttctcaattcgccatcgaagatgaaggaaatcatccacagaacatggaagcttgagaggaccattggtatggtagccat |
100 |
Q |
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| T |
44501796 |
ttatgttggttaggagattctttctcaattcgccatcgaagatgaaggaaatcatccacagaacatggaagcttgagaggaccattggtatggtagccat |
44501895 |
T |
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| Q |
101 |
aaacatcataagcttggtcgagaagacgcttgaaaagtggatggtaaagataagagataggtatgacaaatttctgagcgcaagaaccaccttcttcttc |
200 |
Q |
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| T |
44501896 |
aaacatcataagcttggtcgagaagacgcttgaaaagtggatggtaaagataagagataggtatgacaaatttctgagcgcaagaaccaccttcttcttc |
44501995 |
T |
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| Q |
201 |
ttcctctaaacccacttgaactg |
223 |
Q |
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| T |
44501996 |
ctcctctaaacccacttgaactg |
44502018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 39682279 - 39682434
Alignment:
| Q |
16 |
gattctttctcaattcgccatcgaagatgaaggaaatcatccacagaacatggaagcttgagaggaccattggtatggtagccataaacatcataagctt |
115 |
Q |
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| T |
39682279 |
gattctttttcaattcgccaacggaggtgaagaaagtcatcaacagaacaaggaagcttgagaggaccatcagtattgtagccataaatctcgtaagctt |
39682378 |
T |
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| Q |
116 |
ggtcgagaagacgcttgaaaagtggatggtaaagataagagataggtatgacaaat |
171 |
Q |
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| T |
39682379 |
tatcaagaagatggttgaaaagaggatgataaagatatgaaatagggatgagaaat |
39682434 |
T |
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