View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_low_25 (Length: 235)
Name: NF17512_low_25
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 11055477 - 11055702
Alignment:
| Q |
12 |
agaaacaccaaattgtttt-aaaaaatatatgatgtatgtttgatattagagtgaatattttagaatcactccgatcatgattttctaaaaactacattt |
110 |
Q |
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| T |
11055477 |
agaaacaccaaattgtttttaaaaaatatacgatgtatgtttgatatcagagtggatatttcagaatcactccgatcatgattttctaaaaattacattt |
11055576 |
T |
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| Q |
111 |
cgtaaattctacaaaatcaggatgaatcactgcgattctgatatactcatcctaat-agtttatacttattttggttatttgcagatttcttggtacaat |
209 |
Q |
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| T |
11055577 |
cgtagattctgcaaaatcaggatgaatcattgtgattctgatatactcatcctaataagcttatacttattttggttatttgcagatttcttggtacaat |
11055676 |
T |
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| Q |
210 |
ttcaggaagcaaatccatgatttacc |
235 |
Q |
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||||||||||||||| | |||||||| |
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| T |
11055677 |
ttcaggaagcaaatcgacgatttacc |
11055702 |
T |
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