View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_low_4 (Length: 430)
Name: NF17512_low_4
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 1946482 - 1946885
Alignment:
| Q |
17 |
agaaaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcagcttcctaattggtgaatttattaacatgttcagaagt |
116 |
Q |
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| T |
1946482 |
agaaaaaatatctggtggtggtggagcaccgccactcatcactaccaccttcccagaaagcggcttcctaattggtgaatttattaacatgttcagaagt |
1946581 |
T |
|
| Q |
117 |
gctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgag |
216 |
Q |
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| T |
1946582 |
gctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacatttcttaggcaaacatttgtgccaccttgag |
1946681 |
T |
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| Q |
217 |
cagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagc |
316 |
Q |
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| T |
1946682 |
cagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttgatttcatttcattaataataattgtagc |
1946781 |
T |
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| Q |
317 |
caaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcc |
416 |
Q |
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| T |
1946782 |
caaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgtaacttattgaaattgtatcacattcatcc |
1946881 |
T |
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| Q |
417 |
tttg |
420 |
Q |
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| T |
1946882 |
tttg |
1946885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 89 - 420
Target Start/End: Original strand, 1928442 - 1928773
Alignment:
| Q |
89 |
tggtgaatttattaacatgttcagaagtgctggtgctcctcccatgtgagttacattgtgcttaaagatattgtcaaatatatctttatcagttacattt |
188 |
Q |
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| T |
1928442 |
tggtgcatttattaatgagttcagaactgttggtgcaccccccgtgtgtgttactttgtgcttaaaaatattgtcaaatatccctttagcagttacattt |
1928541 |
T |
|
| Q |
189 |
cttaggcaaacatttgtgccaccttgagcagcaatactccaagggacacaccatccattgcaatgatacataggaacacaccataaatacactgatgttg |
288 |
Q |
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||| |||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||| |||| |||||||||||||||||||| | | | |
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| T |
1928542 |
ctttggcaaacatttgcgccaccttgagcagcaataccccaaggaagacaccatccattgcaatgaaacatgggaacacaccataaatacaccggcatag |
1928641 |
T |
|
| Q |
289 |
atttcatttcattaataataattgtagccaaagaattaagataagcacctctatggctaaagattacacccttaggagttgatgtggttccagaagtgta |
388 |
Q |
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| T |
1928642 |
acttcatctcattgagaagaattgtagccaaagaattaagataagcacctctgtggctatatactacacctttaggacttgatgttgttccagaagtgta |
1928741 |
T |
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| Q |
389 |
acttattgaaattgtatcacattcatcctttg |
420 |
Q |
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| | | ||||||| ||| |||||||| |||| |
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| T |
1928742 |
attcaaagaaattggatcccattcatcttttg |
1928773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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