View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_low_6 (Length: 380)
Name: NF17512_low_6
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 9257712 - 9258073
Alignment:
| Q |
1 |
gaaacttaccaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcataatatttgttac |
100 |
Q |
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| T |
9257712 |
gaaacttaccaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcataatatttgttac |
9257811 |
T |
|
| Q |
101 |
catttcttgactcagtaattggaagccaagcatcttgaggatcaagcttagttaatctcaaagctttcctcataggacttcccaaaggggtaataaacct |
200 |
Q |
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| T |
9257812 |
catttcttgactcagttattggaagccaagcatcttgaggatcaagcttagttaatctcaaagctttcctcataggacttcccaaaggggtaataaacct |
9257911 |
T |
|
| Q |
201 |
tggtgtcaaagacattcttggtgttctaggagtctttggagtcttactcttaggatgtggtgcatctccattctctgattgaagtagtggtgatcttgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9257912 |
tggtgtcaaagacattcttggtgttctaggagtctttggagtcttactcttaggatgtggtgcatctccattctctgattgaagtagtggtgatcttgtg |
9258011 |
T |
|
| Q |
301 |
agagatggtgaatgaagctgtgaaggtggacatgacactggtggtgatgcaaccctaggtgt |
362 |
Q |
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| T |
9258012 |
agagatggtgaatgaagctgtgaaggtggacatgacactggtggtgatgcaaccctaggtgt |
9258073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 3 - 343
Target Start/End: Original strand, 9244047 - 9244384
Alignment:
| Q |
3 |
aacttaccaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcataatatttgttacca |
102 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9244047 |
aacttaccaaccaagaatagtgaaagcaacaggaagaacaagagcttgaataccaatcccagaacaaagagtatgaaaagcagcataatatttgttacca |
9244146 |
T |
|
| Q |
103 |
tttcttgactcagtaattggaagccaagcatcttgaggatcaagcttagttaatctcaaagctttcctcataggacttcccaaaggggtaataaaccttg |
202 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||||| ||||| | ||| |||| ||||||||||||||||||| |
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| T |
9244147 |
tttcttgactcagttattggaagccaagcatcttgaggatcaagtttgattagtctcaaagcattcctaacaggtgttcctaaaggggtaataaaccttg |
9244246 |
T |
|
| Q |
203 |
gt---gtcaaagacattcttggtgttctaggagtctttggagtcttactcttaggatgtggtgcatctccattctctgattgaagtagtggtgatcttgt |
299 |
Q |
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|| || ||||||||||||||||||||||| ||||| || |||| |||| ||||| ||| |||||||||| ||||| || ||||||||||| |
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| T |
9244247 |
gtggggtaaaagacattcttggtgttctaggggtctt----gt-----tctttggatttggtgtatcctcattctctgaatgaagaaggggtgatcttgt |
9244337 |
T |
|
| Q |
300 |
gagagatggtg---aatgaagctgtgaaggtggacatgacactggtg |
343 |
Q |
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| T |
9244338 |
gagagatggtgagtattgaagctgagaggggggacatgatactggtg |
9244384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 3099825 - 3099782
Alignment:
| Q |
109 |
gactcagtaattggaagccaagcatcttgaggatcaagcttagt |
152 |
Q |
| |
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||||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
3099825 |
gactcggtaattggaagccatgcatcttgaggattaagcttagt |
3099782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 53781715 - 53781796
Alignment:
| Q |
8 |
accaaccaagaatagtgaaggcaacaggaagaacaagagcctgaataccaatcccagaacaaagagtatgaaaagcagcata |
89 |
Q |
| |
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|||| |||||| | |||||||| | |||||||||||| || |||| ||||| ||||||||||| ||||||||||||||| |
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| T |
53781715 |
accagccaagagtggtgaaggccaaaggaagaacaagtgcttgaaatccaattccagaacaaagcaaatgaaaagcagcata |
53781796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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