View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17512_low_9 (Length: 356)
Name: NF17512_low_9
Description: NF17512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17512_low_9 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 44190633 - 44190300
Alignment:
| Q |
17 |
attttccataccaattgtatgaaaggttgcatgtatttttcaataaaataataacaaatagttacttattgttcataagtcttaattcaactgataaaaa |
116 |
Q |
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| T |
44190633 |
attttccataccaattgtatgaaaggttgcatgtattttccaataaaataataacaaatagttacttattgtacataagtcttaattcaactgataaaaa |
44190534 |
T |
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| Q |
117 |
tgtcaaaattactagattgaacgtaatgattgaggtttgaacctctactttagacaaaaatgtcaaaattgctaagagagcaaatagttacttactcttt |
216 |
Q |
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| T |
44190533 |
tgtcaaaattactagattgaacataatgattgaggtttgaacctctactttagacaaaaatgtcaaaattgctaagagagcaaatagttacttactcttt |
44190434 |
T |
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| Q |
217 |
tgattgaaatcatactgggtaaccaaccaatattcaagtttagtgctatgttccttacttttggctatgcgtaatacttacaaccagaacaatccattct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44190433 |
tgattgaaatcatactgggtaaccaaccaatattcaagtttagtgctatgttccttacttttggctatgcgtaatacttacaaccagaacaatccattct |
44190334 |
T |
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| Q |
317 |
tccaataaaagatgtatagtaatattcatctcac |
350 |
Q |
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| T |
44190333 |
tccaataaaagatgtatagtaatattcatttcac |
44190300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 40359563 - 40359520
Alignment:
| Q |
111 |
taaaaatgtcaaaattactagattgaacgtaatgattgaggttt |
154 |
Q |
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| T |
40359563 |
taaaaatgtcaaaattattatattgaacgtcatgattgaggttt |
40359520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 22084 - 22120
Alignment:
| Q |
90 |
cataagtcttaattcaactgataaaaatgtcaaaatt |
126 |
Q |
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| T |
22084 |
cataagtcttaactcaactaataaaaatgtcaaaatt |
22120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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