View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17513_high_10 (Length: 293)
Name: NF17513_high_10
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 10270349 - 10270079
Alignment:
| Q |
12 |
agcataggcaccataata--gaagtggaacaagcccttgaagagaccaatataacgtaggttactctctttgacgcaagatgagtagtactagcttatat |
109 |
Q |
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| T |
10270349 |
agcattggcaccataatatagaagtggaacaagcccttgaagagaccaatataacgtaggttactctctttgaggcaagatgagtagtactagcttatat |
10270250 |
T |
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| Q |
110 |
ggattttggaggaagagaaagatgcaagagcaatatttcccagacaaataatggagtggccatatcctggtggatcaaaacaaatcatcacaaagtttta |
209 |
Q |
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| T |
10270249 |
ggattttggaggaagagaaagatgcaagagcaatatttcccagacaaataatggagtgaccatatcctggtgaatcaaaacaaatcatcacaaagtttta |
10270150 |
T |
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| Q |
210 |
taatcttgacgaagtga----tgattccaaatggaaatggtaaagatataatcttccaagtggttcaattt |
276 |
Q |
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| T |
10270149 |
taatcttgacgaagtgataattaattccaaatggaaatggtaaagatataatcttccaagtggttcaattt |
10270079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 276
Target Start/End: Complemental strand, 10238563 - 10238442
Alignment:
| Q |
151 |
agacaaataatggagtggccatatcctggtggatcaaaacaaatcatcacaaagttttataatcttgacgaagtgatgattccaaatggaaatggtaaag |
250 |
Q |
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|||||||| | |||||||||| ||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
10238563 |
agacaaatgagggagtggccacatcttggtggatcaaaacaaatcatcacaaagttctctaatcttgatgaagtgatgatttcaaatggaaatggcaaag |
10238464 |
T |
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| Q |
251 |
atataatcttccaagtggttcaattt |
276 |
Q |
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| T |
10238463 |
gt----tcttccaagtggatcaattt |
10238442 |
T |
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