View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17513_high_13 (Length: 257)
Name: NF17513_high_13
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_high_13 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 4856470 - 4856711
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4856470 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
4856569 |
T |
|
| Q |
105 |
tttgagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttcca |
204 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4856570 |
ttagagactcaatgtgagtttatggtcaatctaagtcatgtactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttcca |
4856669 |
T |
|
| Q |
205 |
tgtatttgctactagttgatgatcagtccctacctatccttt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4856670 |
tgtatttgctactagttgatgatcagtccctacctatccttt |
4856711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 4878205 - 4878446
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4878205 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
4878304 |
T |
|
| Q |
105 |
tttgagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttcca |
204 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4878305 |
ttagagactcaatgtgagtttatggtcaatctaagtcatgtactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttcca |
4878404 |
T |
|
| Q |
205 |
tgtatttgctactagttgatgatcagtccctacctatccttt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4878405 |
tgtatttgctactagttgatgatcagtccctacctatccttt |
4878446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 4852499 - 4852716
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4852499 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
4852598 |
T |
|
| Q |
105 |
tttgagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttcca |
204 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
4852599 |
ttagagactcaatgtgagtttatggtcgatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaag----ttcca |
4852694 |
T |
|
| Q |
205 |
tgtatttgctactagttgatga |
226 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
4852695 |
tgtagttgctactagtttatga |
4852716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 4841851 - 4842070
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
104 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4841851 |
cactaataaggataagaaaaaggatttagccattttaagaagtgatattattatt-gtgttggtgcataatacatatggaattaactggttttatactaa |
4841949 |
T |
|
| Q |
105 |
tttgagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttcca |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4841950 |
ttagagactcaatgtgagtttatggtcaatctaagttatttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttaca----acttcca |
4842045 |
T |
|
| Q |
205 |
tgtatttgctactagttgatgatca |
229 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4842046 |
tgtatttgctactagttgatgatca |
4842070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 4835172 - 4835384
Alignment:
| Q |
12 |
aaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactagtttgaga |
111 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
4835172 |
aaggataagaaaaaggatttagccattttaagaagtgatattattattagtgttggtgcataatacatatggagttaactggttttatactaattagaga |
4835271 |
T |
|
| Q |
112 |
ctcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtattt |
211 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
4835272 |
ctcaaagtgagtttatggtcaatcaaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaag----gtccatgtattt |
4835367 |
T |
|
| Q |
212 |
gctactagttgatgatc |
228 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
4835368 |
gctactacttgatgatc |
4835384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 4826430 - 4826570
Alignment:
| Q |
12 |
aaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactagtttgaga |
111 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
4826430 |
aaggataagaaaaaggaattagccactttaagaagtgatattattattagtgttggtgcataatacatagagagttaactggttttatactagttagaga |
4826529 |
T |
|
| Q |
112 |
ctcaatgtgagtttatggtcaatctaagtcatttactaaat |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4826530 |
ctcaatgtgagtttatggtcaatctaagtcatttactaaat |
4826570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 4871551 - 4871689
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
4871551 |
cactaataaggataagaaaaaggaattagccattttaagaagtgatattattatt-gtgttggtgcataatacatatggagttaactggctttatactag |
4871649 |
T |
|
| Q |
105 |
tttgagactcaatgtgagtttatggtcaatctaagtcatt |
144 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4871650 |
ttagagactcaatgtgagtttatggtcaatctaagtcatt |
4871689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 4860768 - 4860975
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggag-tatactggttttatacta |
103 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
4860768 |
cactaataaggataagaaaaaggatttagccattttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttttatacta |
4860867 |
T |
|
| Q |
104 |
gtttgagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttcc |
203 |
Q |
| |
|
||| |||||||||||||||| ||| ||||||| || || ||||||||| | |||||||||||||||||||||||||| | |||| |
|
|
| T |
4860868 |
gttagagactcaatgtgagtctatcgtcaatc--------------aaagttaaaattgtgcacgaattgaattattcaacaatgttacaag----ttcc |
4860949 |
T |
|
| Q |
204 |
atgtatttgctactagttgatgatca |
229 |
Q |
| |
|
||||||||| |||||| ||||||||| |
|
|
| T |
4860950 |
atgtatttgatactagctgatgatca |
4860975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 4880775 - 4880982
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggag-tatactggttttatacta |
103 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
4880775 |
cactaataaggataagaaaaaggatttagccattttaagaagtgatataattattagtgttggtgcataatacatagggagttaaactggttttatacta |
4880874 |
T |
|
| Q |
104 |
gtttgagactcaatgtgagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttcc |
203 |
Q |
| |
|
||| |||||||||||||||| ||| ||||||| || || ||||||||| | |||||||||||||||||||||||||| | |||| |
|
|
| T |
4880875 |
gttagagactcaatgtgagtctatcgtcaatc--------------aaagttaaaattgtgcacgaattgaattattcaacaatgttacaag----ttcc |
4880956 |
T |
|
| Q |
204 |
atgtatttgctactagttgatgatca |
229 |
Q |
| |
|
||||||||| |||||| ||||||||| |
|
|
| T |
4880957 |
atgtatttgatactagctgatgatca |
4880982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 4845792 - 4845930
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
4845792 |
cactaataaggataagaaaaaggaattagccattttaagaagtgatattattatt-gtgttggtgcataatacataggtagttaactggctttatactag |
4845890 |
T |
|
| Q |
105 |
tttgagactcaatgtgagtttatggtcaatctaagtcatt |
144 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4845891 |
ttagagactcaatgtgattttttggtcaatctaagtcatt |
4845930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 4842873 - 4842978
Alignment:
| Q |
120 |
gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
4842873 |
gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacaag----ctccatgtatttgctactag |
4842968 |
T |
|
| Q |
220 |
ttgatgatca |
229 |
Q |
| |
|
|||||||||| |
|
|
| T |
4842969 |
ttgatgatca |
4842978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 4868569 - 4868674
Alignment:
| Q |
120 |
gagtttatggtcaatctaagtcatttactaaatgtcaaaattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
4868569 |
gagtttatggtcaatctaagtcatttactaaatgtcaaaattatgtatgaattgaattattcaacaatgttacaag----ctccatgtatttgctactag |
4868664 |
T |
|
| Q |
220 |
ttgatgatca |
229 |
Q |
| |
|
|||||||||| |
|
|
| T |
4868665 |
ttgatgatca |
4868674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 4846018 - 4846102
Alignment:
| Q |
158 |
aattgtgtatgaattgaattattcaacaatgttacatgttccttccatgtatttgctactagttgatgatcagtccctacctatccttt |
246 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
4846018 |
aattgtttatgaattgaattattgaacaatgttacatg----ttccatgtatttgcaactagttgatgattggtagctacctatccttt |
4846102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 4837426 - 4837466
Alignment:
| Q |
112 |
ctcaatgtgagtttatggtcaatctaagtcatttactaaat |
152 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4837426 |
ctcaatgtgagtttatggtcaatataagtcatttactaaat |
4837466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 21703867 - 21703749
Alignment:
| Q |
5 |
cactaataaggataagaaaaatgaattagccattttaagaagtgatataattattagtgttggtgcataatacatatggagtatactggttttatactag |
104 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||| | ||| || ||||||||||||| |
|
|
| T |
21703867 |
cactagtaaggacaagaaaaaagaattagccattttaagaagtgatattaatattagtgttggtgcataagacataggaagttaaccggttttatactag |
21703768 |
T |
|
| Q |
105 |
tttgagactcaatgtgagt |
123 |
Q |
| |
|
|| ||||||||||| |||| |
|
|
| T |
21703767 |
ttagagactcaatgggagt |
21703749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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