View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17513_high_4 (Length: 445)
Name: NF17513_high_4
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 251 - 427
Target Start/End: Original strand, 43147245 - 43147421
Alignment:
| Q |
251 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
350 |
Q |
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| T |
43147245 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
43147344 |
T |
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| Q |
351 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatacaccatatttaaat |
427 |
Q |
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| T |
43147345 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatacgaatcaagttgaatgatacaccatatttaaat |
43147421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 43147010 - 43147104
Alignment:
| Q |
16 |
atgaatgaagttattataaaacaaatatagaaaagacgtataaaattacatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
110 |
Q |
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| T |
43147010 |
atgaatgaagttattataaaacaaatatagaaaagacgtataaaattatatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
43147104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 251 - 422
Target Start/End: Original strand, 39362723 - 39362893
Alignment:
| Q |
251 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
350 |
Q |
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| T |
39362723 |
agttgagtgcattatgggagtgtttggcccagcttattgctgac-ttttctagtccttaagagaagttgtgccatacaatttttgaagaaagcacagtag |
39362821 |
T |
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| Q |
351 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatacaccatatt |
422 |
Q |
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| T |
39362822 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatgcaccatatt |
39362893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 39362573 - 39362631
Alignment:
| Q |
18 |
gaatgaagttattataaaacaaatatagaaaagacgtataaaattacatagaagtcaac |
76 |
Q |
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| T |
39362573 |
gaatgaagttatcatgaaacaaatatagaaaagacgtgtaaaactaaatagaagtcaac |
39362631 |
T |
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