View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17513_high_9 (Length: 312)
Name: NF17513_high_9
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 112 - 297
Target Start/End: Complemental strand, 12622991 - 12622806
Alignment:
| Q |
112 |
ggatgggaatgtaatattaggaagctataacagtgtgccgccacgacaccaataaccaatgaattcctgaagttcgagatatagactcctataatgatca |
211 |
Q |
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| T |
12622991 |
ggatgggaatgtaatattaggaagctataacagtgtgccgccacgacaccaataaccaatgaattcctgaagttcgagatatagactcctataatgatca |
12622892 |
T |
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| Q |
212 |
acagaaaaacttagttgtctaattgcctccctcttctcctcagccctatcggagatcacaccgttctgcctggttacctctttact |
297 |
Q |
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| T |
12622891 |
acagaaaaacttagttgtctaattgcctccctcttctcctcagccctatcggagatcacaccgttctgcctggttacctctttact |
12622806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 12623097 - 12623028
Alignment:
| Q |
4 |
gagtgaaaagaaagaaagacattattcagcaaagtttaggtgcatagcaggaatgaatatgaaaccgatg |
73 |
Q |
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| T |
12623097 |
gagtcaaaaggaagaaagacattattcagcaatgtttaggtgcatagcaggaatgaatatgaaaccgatg |
12623028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 294
Target Start/End: Complemental strand, 12628921 - 12628735
Alignment:
| Q |
112 |
ggatgggaatgtaatattaggaagctataacagtgtg-ccgccacgacaccaataaccaatgaattcctgaa---gttcgagatatagactcctataatg |
207 |
Q |
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| T |
12628921 |
ggatgagaatgtaactttaggaagctataacagtgtgaccgccacgacgcctatggccaacaaccgcctgaaaaagtttgagatatcgactcctatagta |
12628822 |
T |
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| Q |
208 |
atcaacagaaaaacttagttgtctaattgcctccctcttctcctcagccctatcggagatcacaccgttctgcctggttacctcttt |
294 |
Q |
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| T |
12628821 |
ctcaagggaaaagcataattgtctaattgcctccctcttctcctcagccctatctgagatcacaccattctgtttagttacctcttt |
12628735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 12629017 - 12628961
Alignment:
| Q |
17 |
gaaagacattattcagcaaagtttaggtgcatagcaggaatgaatatgaaaccgatg |
73 |
Q |
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| T |
12629017 |
gaaagacattattatgcaatgtttgggtgcatcgctggaatgaatatgaaacagatg |
12628961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 294
Target Start/End: Complemental strand, 42844323 - 42844219
Alignment:
| Q |
190 |
atatagactcctataatgatcaacagaaaaacttagttgtctaattgcctccctcttctcctcagccctatcggagatcacaccgttctgcctggttacc |
289 |
Q |
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| T |
42844323 |
atatcgactcttatagtgctcaagtgaataacttagttgtctaattgcctccttcttctcctcggccacatctgaaatcacaccattctgtctagtcacc |
42844224 |
T |
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| Q |
290 |
tcttt |
294 |
Q |
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||||| |
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| T |
42844223 |
tcttt |
42844219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 30923774 - 30923835
Alignment:
| Q |
233 |
attgcctccctcttctcctcagccctatcggagatcacaccgttctgcctggttacctcttt |
294 |
Q |
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| T |
30923774 |
attgcctccctcttctcttcatcccgatcggagatcacaacattctgtctagtcacctcttt |
30923835 |
T |
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