View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17513_low_1 (Length: 532)
Name: NF17513_low_1
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 29007615 - 29007098
Alignment:
| Q |
1 |
tacaaccaaatttgaaagtgtaaacagagacactaaaacacgtgtattacacgattgattaactaacttcaaatgaactaccttagaatggacacaaaat |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
29007615 |
tacaaccaaatttgaaagtgtaaacagaaacactaaaacacgtgtattacacgattgattaactaacttcaaatgaactacctcagaatggacataaaat |
29007516 |
T |
|
| Q |
101 |
caaatttatcttaattttaaaaaagcataatagaatctaaccttccaagattgttgaccattgtaagcataaacaaaacgagctctcttaacatcttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007515 |
caaatttatcttaattttaaaaaagcataatagaatctaaccttccaagattgttgaccattgtaagcataaacaaaacgagctctcttaacatcttcaa |
29007416 |
T |
|
| Q |
201 |
acacgttcttgttctcaccttcacaaaggaaatacacagttgaagtcacttttagccattcgtgcctttcgaagatctcaattgaactcaacgacacaac |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007415 |
acacgttcttgttctccccttcacaaaggaaatacacagttgaagtcacttttagccactcgtgcctttcgaagatctcaattgaactcaacgacacaac |
29007316 |
T |
|
| Q |
301 |
tgcacataacatcaaccctgtacaattcaaatgcaaatgtaatcaacaacatttacacaataaatacacttcgattataacttataattcagcttaaaca |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007315 |
tgcacataacatcaaccctgtacaattcaaatgcaaatgcaatcaacaacatttacacaataaatacacttcgattataacttataattcagcttaaaca |
29007216 |
T |
|
| Q |
401 |
cgttttcttgtgt--tgtgcaatcgacgcgtcaagagcaccgacacttgtgatcgaaaacgtatcagtgaattgta-cattgtcaatatcctgatgcatg |
497 |
Q |
| |
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| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
29007215 |
catttttttgtgtgctgtgcaatcgacacgtcaagagcaccgacacttgtgatcgaaaacgtatc--tgaattgtatcattttcaatatcctgatgcatg |
29007118 |
T |
|
| Q |
498 |
tgtttgtgtctgtgcttcat |
517 |
Q |
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|||||||||| ||||||||| |
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| T |
29007117 |
tgtttgtgtccgtgcttcat |
29007098 |
T |
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