View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17513_low_11 (Length: 262)
Name: NF17513_low_11
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 26653359 - 26653601
Alignment:
| Q |
1 |
ttgtaaacgtagcccgacaagtgcccttgcctgttttccttacaagggatgtatgattctagcatgccccaaatcaaaagatcaatcaagggattttgat |
100 |
Q |
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| T |
26653359 |
ttgtaaacctaatccgacaaatacccttgcctgttttccttataagggatgtctgattctagcatgccccaagtcaaaagatcaatcaagggattttgat |
26653458 |
T |
|
| Q |
101 |
atgttgcataagtcgacttgatctacaagcctttgttaccacctcacttctgccttttcactctctcttaatctttctttctctaacttgaatattgagt |
200 |
Q |
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| T |
26653459 |
atgttgcataagtcgacttgatctacaagcctttgttaccacctcgcttctgccttttcactctctcttaatctttctttctctaacttgaatattgagt |
26653558 |
T |
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| Q |
201 |
gaatgaattgaaagtaaggttgcaagcctattttctaagttgt |
243 |
Q |
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| T |
26653559 |
gaatgaattgaaagtaaggttgcaagcctattttctaagttgt |
26653601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 29275719 - 29275593
Alignment:
| Q |
102 |
tgttgcataagtcgacttgatctacaagcctttg---ttaccacctcacttctgccttttcactctctcttaatctttctttctctaacttgaatattga |
198 |
Q |
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| T |
29275719 |
tgttgcatcagtcgacttgatctacaaggctttgatgtttctaccctgcttcagccctttaactctctcataagcttgctttctctaacttgagtattga |
29275620 |
T |
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| Q |
199 |
gtgaatgaattgaaagtaaggttgcaa |
225 |
Q |
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| T |
29275619 |
atgagtgaattggaagtgaggttgcaa |
29275593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 7480225 - 7480173
Alignment:
| Q |
177 |
ctttctctaacttgaatattgagtgaatgaattgaaagtaaggttgcaagcct |
229 |
Q |
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|||||||||| ||||||||||| |||||||||||||||| ||| | ||||||| |
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| T |
7480225 |
ctttctctaagttgaatattgaatgaatgaattgaaagtgaggcttcaagcct |
7480173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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