View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17513_low_12 (Length: 259)
Name: NF17513_low_12
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 12125583 - 12125745
Alignment:
| Q |
82 |
gaataaaccatgcacattattatttaaacaagacaaattagaaaatacgagtagtagccatatatatggagctaaaaatcaaagcaataggccaaaatat |
181 |
Q |
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| T |
12125583 |
gaataaaccatgcacattattatttaaaaaagacaaattagaaaatacgagtagtagccatatatatggagctaaaaatcaaagcaataggccaaaatat |
12125682 |
T |
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| Q |
182 |
agaacaaattcagaatgatggcaactatctattttccctttggcatagatcaagtattataag |
244 |
Q |
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| T |
12125683 |
agaacaaattcagaatgatggcaactatctattttccctttggcatagatcaagtattataag |
12125745 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 12125519 - 12125560
Alignment:
| Q |
14 |
cctgtgggtgtaaacctttggtgatactaacaccatgcacaa |
55 |
Q |
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| T |
12125519 |
cctgcgggtgtaaacctttggtgatactaacaccatgcacaa |
12125560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 12354504 - 12354557
Alignment:
| Q |
161 |
caaagcaataggccaaaatatagaacaaattcagaatgatggcaactatctatt |
214 |
Q |
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| T |
12354504 |
caaagaaataggccaaaacatagagcaaattcagaatgattgcaactatctatt |
12354557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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