View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17513_low_6 (Length: 429)
Name: NF17513_low_6
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_low_6 |
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| [»] scaffold0428 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 209 - 417
Target Start/End: Complemental strand, 17443986 - 17443780
Alignment:
| Q |
209 |
cgctcacatgtcatccacattcacagcttaggttaggttttgttcatgtcaaattaattagtcttttagctttaaaaatatttacaacaatgatatacta |
308 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443986 |
cgctcacatgtcatacacattcacagcttaggtttggttttgttcgtgtcaaattaattagtcttttagctttaaaaatatttacaacaatgatatacta |
17443887 |
T |
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| Q |
309 |
tagagtgtttcacagatcagtaccacgattggactttcgattgacaacaaggtcacagttttagatnnnnnnnnnnnnctattgtattaattttgatgga |
408 |
Q |
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| T |
17443886 |
taga--gtttcccagatcagtaccacgattggactttcgattgacaagaaggtcacagttttagataaaaacaaaaaactattgtattaattttgatgga |
17443789 |
T |
|
| Q |
409 |
ttagatatt |
417 |
Q |
| |
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||||||||| |
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| T |
17443788 |
ttagatatt |
17443780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 17445400 - 17445229
Alignment:
| Q |
26 |
gaccactaccgttgatttcctgcaacacaacattgaacagtttaatannnnnnnctcaattttttgtgtttaactaacgcctacacatgtggttacgttc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||| |
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| T |
17445400 |
gaccactaccgttgatttcctgcaacacaacattgaacagattaatatttttt-ctcaactttttgtgtttaactaacgc----------------gttc |
17445318 |
T |
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| Q |
126 |
agttgttgcaatttctaaaattattaccaaagccaacatgtcaatgttagtgtcgtgtcaaatgttcgtatttgatagcttaacgctca |
214 |
Q |
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| T |
17445317 |
agttgttgcattttctaaaattattaccaaagtcagcatgtcaacgttagtgtcgtgtcaaatgttcgtatttgatagagtaacgctca |
17445229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 33384338 - 33384422
Alignment:
| Q |
105 |
cctacacatgtggttacgttcagttgttgcaatttctaaaattattaccaaagccaacatgtcaatgttagtgtcgtgtcaaatg |
189 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||| | | ||||| || |||||| |||||||||||| |
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| T |
33384338 |
cctacacatgtggctacgttcagttgttgcattttctaaaattattaccaatgtcgacatgccagcgttagtatcgtgtcaaatg |
33384422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 33258610 - 33258669
Alignment:
| Q |
109 |
cacatgtggttacgttcagttgttgcaatttctaaaattattaccaaagccaacatgtca |
168 |
Q |
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| T |
33258610 |
cacatgtggttacattcagttgatgcattttctaaaattattaccaatgccgacatgtca |
33258669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 33258506 - 33258552
Alignment:
| Q |
26 |
gaccactaccgttgatttcctgcaacacaacattgaacagtttaata |
72 |
Q |
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||||| |||||||||||||||||||| |||||||||||| ||||||| |
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| T |
33258506 |
gaccagtaccgttgatttcctgcaacccaacattgaacaatttaata |
33258552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 33384244 - 33384290
Alignment:
| Q |
26 |
gaccactaccgttgatttcctgcaacacaacattgaacagtttaata |
72 |
Q |
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| T |
33384244 |
gaccactaccgttgatttcctgcaaaacaacattgagcaatttaata |
33384290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 28872954 - 28872911
Alignment:
| Q |
27 |
accactaccgttgatttcctgcaacacaacattgaacagtttaa |
70 |
Q |
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| T |
28872954 |
accactactgttgatttcttgcaacacaacattgaacaatttaa |
28872911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 33414984 - 33415025
Alignment:
| Q |
107 |
tacacatgtggttacgttcagttgttgcaatttctaaaatta |
148 |
Q |
| |
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||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
33414984 |
tacacatgttgttacattcagttgttgcattttctaaaatta |
33415025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 33259049 - 33259081
Alignment:
| Q |
265 |
attagtcttttagctttaaaaatatttacaaca |
297 |
Q |
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| T |
33259049 |
attagtcttttatctttaaaaatatttacaaca |
33259081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 2731 - 2790
Alignment:
| Q |
109 |
cacatgtggttacgttcagttgttgcaatttctaaaattattaccaaagccaacatgtca |
168 |
Q |
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||||||||||||| |||||||| |||| ||||||||||||||||||| ||| |||||||| |
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| T |
2731 |
cacatgtggttacattcagttgatgcattttctaaaattattaccaatgccgacatgtca |
2790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 2627 - 2673
Alignment:
| Q |
26 |
gaccactaccgttgatttcctgcaacacaacattgaacagtttaata |
72 |
Q |
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||||| |||||||||||||||||||| |||||||||||| ||||||| |
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| T |
2627 |
gaccagtaccgttgatttcctgcaacccaacattgaacaatttaata |
2673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 3170 - 3202
Alignment:
| Q |
265 |
attagtcttttagctttaaaaatatttacaaca |
297 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
3170 |
attagtcttttatctttaaaaatatttacaaca |
3202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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