View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17513_low_8 (Length: 313)
Name: NF17513_low_8
Description: NF17513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17513_low_8 |
 | |
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| [»] scaffold0046 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 20011660 - 20011380
Alignment:
| Q |
20 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20011660 |
ttcaccctactctcaagcttctaattgttaccagtggatcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
20011561 |
T |
|
| Q |
120 |
ttgtctgaataggttttataatccctcatttcattattttctttgctctttattcggatgagtggaataaaatgttggctgtgacttgtcgaatgtaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20011560 |
ttgtctgaataggttttataatccctcatttcattctttcctttgctctttattcggatgagtggaataaaatgttggctgtgacttgtcgaatgtaaat |
20011461 |
T |
|
| Q |
220 |
taacaatttcgacactcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtttaatatttcacagta |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20011460 |
taacaatttcgacattcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtttaatatttcacagta |
20011380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 24971105 - 24971385
Alignment:
| Q |
20 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24971105 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacactaacgtaagcttgccaaagtcatttaactcgtattttaa |
24971204 |
T |
|
| Q |
120 |
ttgtctgaataggttttataatccctcatttcattattttctttgctctttattcggatgagtggaataaaatgttggctgtgacttgtcgaatgtaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24971205 |
ttgtctgaataggttttataatccctcatttcattattttctttgctctttattcggatgagtggaataaaatgttggctgtgacttgttgaatgtaaat |
24971304 |
T |
|
| Q |
220 |
taacaatttcgacactcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtttaatatttcacagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24971305 |
taacaatttcgacactcaatgacgaatggcaagttgtaaaacataagcaaggttttcttcgaggtttaatatttcacagta |
24971385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 25429605 - 25429325
Alignment:
| Q |
20 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25429605 |
ttcaccctactctcaagcttctaattgttaccagtgggtcagagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
25429506 |
T |
|
| Q |
120 |
ttgtctgaataggttttataatccctcatttcattattttctttgctctttattcggatgagtggaataaaatgttggctgtgacttgtcgaatgtaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25429505 |
ttgtctgaataggttttataatccctcatttcatttttttctttgctctttattcgtatgagtggaataaaatgttggctgtgacttgtcgaatgtaaat |
25429406 |
T |
|
| Q |
220 |
taacaatttcgacactcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtttaatatttcacagta |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25429405 |
taacaatttcgacattcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtttaatatttcacagta |
25429325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 300
Target Start/End: Original strand, 30098469 - 30098735
Alignment:
| Q |
34 |
aagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaattgtctgaataggt |
133 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
30098469 |
aagcttctaattgttaccggtggttcagagggttgtagatattacaccaaggtaagcttgccaaagtcatctaactcagattttaattgtctgaataggt |
30098568 |
T |
|
| Q |
134 |
tttataatccctcatttcattattttctttgctctttattcggatgagtggaataaaatgttggctgtgacttgtcgaatgtaaattaacaatttcgaca |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
30098569 |
tttataatccctcatttcattattttctttgctctttattgtgatgagtggactgaaatgttggatgtgacttgtcgagtttaaattaacaatttcgaca |
30098668 |
T |
|
| Q |
234 |
ctcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtttaatatttcacagta |
300 |
Q |
| |
|
||||||||||||| ||| |||||||||| | || |||||||||||| ||||| |||||||||||||| |
|
|
| T |
30098669 |
ctcaatgacgaatagcaggttgtaaaacttgagtaaggtttgcttcaaggttcaatatttcacagta |
30098735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 30411635 - 30411371
Alignment:
| Q |
20 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
30411635 |
ttcaccctaatctcaagcttctaattgttactgaagggtcgg-gggttgtagatattacaccaaggtaagcttgccaaagtcatttaactcatattttta |
30411537 |
T |
|
| Q |
120 |
ttgtctgaataggttttataatccctcatttcattattttctttgctctttattcggatgagtggaataaaatgttggctgtgacttgtcgaatgtaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | ||||||||| ||||| ||||| ||||||||| |
|
|
| T |
30411536 |
ttgtctgaataggttttataatccctcattttattattttctttgctctttattctgatgagtggactgaaatgttggttgtgatttgtccaatgtaaat |
30411437 |
T |
|
| Q |
220 |
taacaatttcgacactcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtt |
285 |
Q |
| |
|
||| ||||||||||||||||||||||| || | |||||||| | | ||||||||||||| ||||| |
|
|
| T |
30411436 |
taataatttcgacactcaatgacgaatatcaggctgtaaaacttgaccaaggtttgcttctaggtt |
30411371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 46030146 - 46029869
Alignment:
| Q |
20 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
119 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
46030146 |
ttcaccctaatctcaaacttctaattgttaccgaagggtcagagggttgtagatattacaccaaggtaagcttgccaatgccatttaactcagattttaa |
46030047 |
T |
|
| Q |
120 |
ttgtctgaataggttttataatccctcatttcatt-attttctttgctctttattcggatgagtggaataaaatgttggctgtgacttgtcgaatgtaaa |
218 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| |||||||||| ||||||||| |||||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
46030046 |
ttgtctga----gttttataatccctcattgcatttattttctttgatctttattctgatgagtggactgaaatgttggttgtgacttgtcgaatgtaaa |
46029951 |
T |
|
| Q |
219 |
ttaacaatttcgacactcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtttaatatttcacagta |
300 |
Q |
| |
|
||||||| | || |||||| | ||||| ||| |||||||||| | ||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
46029950 |
ttaacaaagttgatactcaacgtcgaatagcaggttgtaaaacttgagcaaggtttgcttcgaggttcaataattcacagta |
46029869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 23898928 - 23898863
Alignment:
| Q |
20 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacg |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23898928 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacg |
23898863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 20006455 - 20006502
Alignment:
| Q |
20 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggtt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
20006455 |
ttcaccctactctcaagcttctaattgttaccaatggatcggagggtt |
20006502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 72084 - 72364
Alignment:
| Q |
20 |
ttcaccctactctcaagcttctaattgttaccagtgggtcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72084 |
ttcaccctactctcaagcttctaattgttaccagtggatcggagggttgtagatattacaccaacgtaagcttgccaaagtcatttaactcatattttaa |
72183 |
T |
|
| Q |
120 |
ttgtctgaataggttttataatccctcatttcattattttctttgctctttattcggatgagtggaataaaatgttggctgtgacttgtcgaatgtaaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
72184 |
ttgtctgaataggttttataatccctcatttcattatttacattgctctttattcgaatgagtggaataaaatgttggctgtgacttgtcgaatgtaaat |
72283 |
T |
|
| Q |
220 |
taacaatttcgacactcaatgacgaatggcaagttgtaaaacataagcaaggtttgcttcgaggtttaatatttcacagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
72284 |
taacaatttcgacactcaatgacgaatggcaagttgtaaaacataagcaaggtttacttcgaggtttaatatttcacagta |
72364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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