View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17514_high_16 (Length: 314)

Name: NF17514_high_16
Description: NF17514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17514_high_16
NF17514_high_16
[»] chr2 (1 HSPs)
chr2 (4-314)||(8188095-8188405)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 314
Target Start/End: Original strand, 8188095 - 8188405
Alignment:
Q  4 aaggagaagaagaatgacttgattagtggtactagtgatggttttaggatagaagacataagcaacacaacgaaaccccgaagcccagtgatagacatag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8188095 aaggagaagaagaatgacttgattagtggtactagtgatggttttaggatagaagacataagcaacacaacgaaaccccgaagcccagtgatagacatag 8188194  T
Q  104 atactgaggatgctatttgtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgagcttgagacctttcttcaagagaccgatgatga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8188195 atactgaggatgctatttgtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgagcttgagacctttcttcaagagactgatgatga 8188294  T
Q  204 agatgatgttcaaaatgtcgatgatgaagaagagtataaaaaatttctagcagctgtattacagggtggagaacgtgacggtctttcatctcatgaaaat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8188295 agatgatgttcaaaatgtcgatgatgaagaagagtataaaaaatttctagcagctgtattacagggtggagaacgtgacggtctttcatctcatgaaaat 8188394  T
Q  304 gaaaaccttga 314  Q
    |||||||||||    
T  8188395 gaaaaccttga 8188405  T

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