View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17514_high_8 (Length: 381)
Name: NF17514_high_8
Description: NF17514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17514_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 23004865 - 23004500
Alignment:
| Q |
1 |
ccttctgaggacctccataacttaaatgatttatccacctcctgttaaatgctaaaaagttcaggaaaaaagtataggctgatgctgaaataattatggc |
100 |
Q |
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| T |
23004865 |
ccttctgaggacctccataacttaaatgatttatccacctcctgttaaatgctaaaaatttcaggaaaaaagtataggctgatgctgaaataattatggc |
23004766 |
T |
|
| Q |
101 |
acattggtatgtcgataatactttgtcaactgtataccggtatcgagatgcaggagacttgaacttcagtaaaactagnnnnnnnn-----tcgctattt |
195 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
23004765 |
acactggtatgtcgataatactttgtcaagtgtataccggtatcgagatgcaggagacttgaacttcagtaaaattagaaagaaagaaaaatcgctattt |
23004666 |
T |
|
| Q |
196 |
caccatactgtgtcaaagatgatgcataacacataatgtgcacacaactactaatgtttatactcactttctgacacagactacgagcatccaactaaca |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23004665 |
caccatactgtgtcaaagatgatgcataacacataatgtgcacacaaatactattgtttatactcactttctgacacagactacgagcatccaactaaca |
23004566 |
T |
|
| Q |
296 |
tgattgatttattaaaaaatacacgtctagccatcaaacaagaattcttaagctatctgatgatgt |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23004565 |
tgattgatttattaaaaaatacacgtctagccatcaaacaagaattcttaagctatctgatgatgt |
23004500 |
T |
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