View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17515_high_1 (Length: 704)

Name: NF17515_high_1
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17515_high_1
NF17515_high_1
[»] chr6 (11 HSPs)
chr6 (19-280)||(33675238-33675488)
chr6 (461-687)||(33675001-33675228)
chr6 (567-687)||(33664389-33664509)
chr6 (567-687)||(33686191-33686311)
chr6 (569-624)||(33693394-33693449)
chr6 (323-374)||(33664742-33664793)
chr6 (323-374)||(33686544-33686595)
chr6 (236-274)||(33665185-33665223)
chr6 (460-531)||(33686390-33686460)
chr6 (460-531)||(33664588-33664658)
chr6 (640-684)||(33693369-33693413)
[»] scaffold0016 (2 HSPs)
scaffold0016 (567-676)||(102922-103029)
scaffold0016 (571-614)||(86319-86362)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-120; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 33675488 - 33675238
Alignment:
Q  19 aatattaaaatagatccatcattggaagtcaatttttgctcattataaatatttcttctaaaagagatctttgctttgtcgaagttcacaagttgactag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33675488 aatattaaaatagatccatcattggaagtcaatttttgctcattataaatatttcttctaaaagagatctttgctttgtcgaagttcacaagttgactag 33675389  T
Q  119 aagaatattgttatagttggggaataccttggctattgatagcatgtgtgactggttagctctaaaaaagatgagattgccatatgcaaaaaacaattga 218  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||           ||||||||||||||||    
T  33675388 aagaatattgttatagttggggaataccttggctactgatagcatgtgtgactggttagctctaaaaaagatg-----------tgcaaaaaacaattga 33675300  T
Q  219 gaatatacaaaaacttcacaaaactgaaaaggacacattagaaacacaattcattagcacca 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33675299 gaatatacaaaaacttcacaaaactgaaaaggacacattagaaacacaattcattagcacca 33675238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 461 - 687
Target Start/End: Complemental strand, 33675228 - 33675001
Alignment:
Q  461 tatgtaaataacttttgnnnnnnngctcatgaagaaaaagtaagtgtactatttttctgacaaggtaaaaaacagtgatataactgaatttgtatgtatg 560  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  33675228 tatgtaaataacttttgtttttttgctcatgaagaaaaagtaagtgtactattttactgacaaggtaaaaaacagtgatataactgaatttgtaagtatg 33675129  T
Q  561 gttatggcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgaattg-nnnnnnnacaggtagtgttgttatctttt 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || |||||||||||||||||||    
T  33675128 gttatggcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgaattgttttttgtactggtagtgttgttatctttt 33675029  T
Q  660 tagaaacgattaattataaatttatcat 687  Q
    ||||||||||||||||||| ||||||||    
T  33675028 tagaaacgattaattataattttatcat 33675001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 567 - 687
Target Start/End: Complemental strand, 33664509 - 33664389
Alignment:
Q  567 gcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgaattgnnnnnnnacaggtagtgttgttatctttttagaaac 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |         |||||||||||||||||||||||||||||    
T  33664509 gcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgtttctttttttgacaggtagtgttgttatctttttagaaac 33664410  T
Q  667 gattaattataaatttatcat 687  Q
    |||||||||||||||||||||    
T  33664409 gattaattataaatttatcat 33664389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 567 - 687
Target Start/End: Complemental strand, 33686311 - 33686191
Alignment:
Q  567 gcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgaattgnnnnnnnacaggtagtgttgttatctttttagaaac 666  Q
    ||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||  |          ||||||||||||||||||||||||||||    
T  33686311 gcagtcattgctcatacattgaaaaagttgaacttttaagtaagtgttgttctcttttgtttctttttttggcaggtagtgttgttatctttttagaaac 33686212  T
Q  667 gattaattataaatttatcat 687  Q
    |||||||||||||||||||||    
T  33686211 gattaattataaatttatcat 33686191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 569 - 624
Target Start/End: Complemental strand, 33693449 - 33693394
Alignment:
Q  569 agtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatctttt 624  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||    
T  33693449 agtcaatgctcattcattgcaaaagttgaacttttaaggtagtgtggttatctttt 33693394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 33664793 - 33664742
Alignment:
Q  323 atattaatgtaacatacattatttcttcatatatttcttatagctaatctct 374  Q
    |||||||| |||||||||||  |||||||||||||||||||| |||||||||    
T  33664793 atattaatataacatacatttcttcttcatatatttcttataactaatctct 33664742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 33686595 - 33686544
Alignment:
Q  323 atattaatgtaacatacattatttcttcatatatttcttatagctaatctct 374  Q
    |||||||| |||||||||||  |||||||||||||||||||| |||||||||    
T  33686595 atattaatataacatacatttcttcttcatatatttcttataactaatctct 33686544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 33665223 - 33665185
Alignment:
Q  236 acaaaactgaaaaggacacattagaaacacaattcatta 274  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  33665223 acaaaacagaaaaggacacattagaaacacaattcatta 33665185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 460 - 531
Target Start/End: Complemental strand, 33686460 - 33686390
Alignment:
Q  460 ctatgtaaataacttttgnnnnnnngctcatgaagaaaaagtaagtgtactatttttctgacaaggtaaaaa 531  Q
    ||||||||||||||||||       |||||||||||||||| | ||||||||||||||| ||||||||||||    
T  33686460 ctatgtaaataacttttgttttttagctcatgaagaaaaagga-gtgtactatttttctaacaaggtaaaaa 33686390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 531
Target Start/End: Complemental strand, 33664658 - 33664588
Alignment:
Q  460 ctatgtaaataacttttgnnnnnnngctcatgaagaaaaagtaagtgtactatttttctgacaaggtaaaaa 531  Q
    ||||||||||||||||||       |||||||||||||||  | ||||||||||||||| ||||||||||||    
T  33664658 ctatgtaaataacttttgttttttagctcatgaagaaaaaaga-gtgtactatttttctaacaaggtaaaaa 33664588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 640 - 684
Target Start/End: Complemental strand, 33693413 - 33693369
Alignment:
Q  640 aggtagtgttgttatctttttagaaacgattaattataaatttat 684  Q
    ||||||||| |||||||||||||||||  |||||| |||||||||    
T  33693413 aggtagtgtggttatctttttagaaacacttaattttaaatttat 33693369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 567 - 676
Target Start/End: Original strand, 102922 - 103029
Alignment:
Q  567 gcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgaattgnnnnnnnacaggtagtgttgttatctttttagaaac 666  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||  ||        |||||||||||||||||||||||||| ||    
T  102922 gcagtcaatgctcatacattggaaaagttgaaactttaagttagtgttgttatattttg--tttttttttgacaggtagtgttgttatctttttagagac 103019  T
Q  667 gattaattat 676  Q
    | ||||||||    
T  103020 gcttaattat 103029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 614
Target Start/End: Original strand, 86319 - 86362
Alignment:
Q  571 tcaatgctcatacattggaaaagttgaacttttaagttagtgtt 614  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  86319 tcaatgctcattcattggaaaagttgaacttttaaattagtgtt 86362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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