View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_high_12 (Length: 440)
Name: NF17515_high_12
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Complemental strand, 37409439 - 37409016
Alignment:
| Q |
13 |
aatatagcattagcacaattaattgtgacggtggattagtctgctacgccttgtgagagaaggcaaaatcatgaaaaagcaaagttattcacagaaaagc |
112 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37409439 |
aatatagcattagcaaagttaattgtgacggtggattagtctgctacgccttgtgagagaaggcaaaatcatgaaaaagcaaagttattcacagaaaagc |
37409340 |
T |
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| Q |
113 |
aaataacaacattgattgattcatcacaaaaagaattgcttctcttccaagccagctatacagttagttgattttacactaacactcataattttccact |
212 |
Q |
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| T |
37409339 |
aaataacaacattgatt----catcacaaaaagaattgcttctcttccaagccagctatacagttagttgattttacactaccactcataattttccact |
37409244 |
T |
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| Q |
213 |
tccaccattaaaatctcacaccgttactcacgagaaacaaactttccgttactataaaactcatcaaaacgttcttcttccattcttctccatttcccaa |
312 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37409243 |
tccaccattaaaacctcacaccgttactcacgagaaacaaactttccgttactataaaactcatcaaaacgttcttcttccattcttctccatttcccaa |
37409144 |
T |
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| Q |
313 |
tgaagatttctacattttctatcattcttctctgtttctttcaatccacacgagccatcttagatcctattgatttcttagcacttcaatctattcgaag |
412 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37409143 |
tgaagatttccacattttctatcattcttctctgtttctttcaatctacacgagccatcttagatcctattgatttcttagcacttcaatctattcgaag |
37409044 |
T |
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| Q |
413 |
atcgcttcacgatgttcctggttccaaa |
440 |
Q |
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| T |
37409043 |
atcgcttcacgatgttcctggttccaaa |
37409016 |
T |
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