View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_high_2 (Length: 654)
Name: NF17515_high_2
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 28053652 - 28053921
Alignment:
| Q |
1 |
tgtttgttccttcttgtaacttcattagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacat |
100 |
Q |
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| T |
28053652 |
tgtttgttccttcttgtaacttcattagtagaaactcgaaacgacgacgtatcttcttttgtaatatcatcacttgagaatgtagcagtaacggtaacat |
28053751 |
T |
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| Q |
101 |
ctgaagcaaacaaactcgtcgcgtaactgcttccactcgacaatctagataacgaagcctccctttcaaaccttctatcaacatcaacaacatccttatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28053752 |
ctgaagcaaacaaactcgtcgcgtaactgcttccactcgacaatctagataacgaagcctccctttcaaaccttctatcaacatcaacaacatccttatc |
28053851 |
T |
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| Q |
201 |
cggcgaagacaccttcgccgaatccggaagcagaagctcacgatcctcctcgtcgtcttcatgtagaata |
270 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28053852 |
aggcgaagacaccttctctgaatccggaagcagaagctcacgatcctcctcgtcctcttcatgtagaata |
28053921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 351 - 617
Target Start/End: Original strand, 28053996 - 28054262
Alignment:
| Q |
351 |
tttatcaaccaaccaatcacaaaacgctgcaatttgcttctgttcatttcgaaactttttaccaagttccgaaaccgcagagttttttgcgagattgtct |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28053996 |
tttatcaaccaaccaatcacaaaacgctgcaatttgcttctgttcatttcgaaactttttaccaagttccgaaaccgcagagttttttgcgagattgact |
28054095 |
T |
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| Q |
451 |
ttggtaggagtgtttgaacttttcggcaggtcgttttcaatgcaaaaagtcgtatccgtagatttgactggagattttttgttctcgtgatctaatgtac |
550 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28054096 |
ttggtaggagtgtttgaacttttcggcacgtcgttttcagtgcaaaaagtcgtatccgtagatttgactggagattttttcttctcgtgatctaatgtac |
28054195 |
T |
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| Q |
551 |
tactctttgaagattcatcgaaccttttctctggaaattgcctaggaaaaaagtaagttgctctgtg |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28054196 |
tactctttgaagattcatcgaaccttttctctggaaattgcctaggaaaaaagtaagttgctctgtg |
28054262 |
T |
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