View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_high_20 (Length: 346)
Name: NF17515_high_20
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 5969699 - 5969404
Alignment:
| Q |
19 |
aaaggtcatactacaagagaattaaatattgacaacaaatatgttgtaggacactgtaca-----aatatacaatttggtatttttatttattttctctc |
113 |
Q |
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| T |
5969699 |
aaagatcatattacaagagaattaaatattgacaacaaatatggtgtcggacaccgtatattataaatatacaatttggtatttttatttattttctttc |
5969600 |
T |
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| Q |
114 |
gctcaatcatatcgacagttgagttgagtgtgtttatataccacatccatacacggcgtcggatttgtgatgttcaaataaccctactctagtataaaca |
213 |
Q |
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| T |
5969599 |
gctcagtcatgtcggcagttgagttgagcgtgtttacataccacatccatatacggcatcagacttgcgatgttcaaatatccctactctattataaaca |
5969500 |
T |
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| Q |
214 |
aggttgaacatgttgcaggccttcacacacttttgaacaatatttgtacacatggtagctatgttcctttaatcttaaagtttgaaaatatatgta |
309 |
Q |
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| T |
5969499 |
aggttgaacatgttgcaggccttcacacacttttgaagaatatttgtacacatggtagctatgttcctttaatctgaaagtttggaaatatatgta |
5969404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 8714448 - 8714744
Alignment:
| Q |
19 |
aaaggtcatactacaagagaattaaatattgacaacaaatatgttgtaggacactgtaca-----aatatacaatttggtatttttatttattttctctc |
113 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||| ||| |||||| ||| | |||||||||||||||||||||||||||||||| || |
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| T |
8714448 |
aaagatcatattacaagagaattaaatattgacaacaaatatggtgtcggacaccgtatattataaatatacaatttggtatttttatttattttctttc |
8714547 |
T |
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| Q |
114 |
gctcaatcatatcgacagttgagttgagtgtgtttatataccacatccatacacggcgtcggatttgtgatgttcaaataaccctactctagtataaaca |
213 |
Q |
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| T |
8714548 |
gctcagtcatgtcggcagttgagttgagcgtgtttacataccacatccatatacggcatcagacttgcgatgttcaaatatccctactctattataaaca |
8714647 |
T |
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| Q |
214 |
aggttgaacatgttgcaggccttcacacacttttgaacaatatttgtacacatggtagctatgttcctttaatcttaaagtttgaaaatatatgtac |
310 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
8714648 |
aggttgaacatgttgcaggccttcacatacttttgaagaatatttgtacacatggtagctatgttcctttaatctgaaagtttggaaatatatgtac |
8714744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 96 - 278
Target Start/End: Complemental strand, 5985770 - 5985594
Alignment:
| Q |
96 |
ttttatttattttctctcgctcaatcatatcgacagttgagttgagtgtgtttatataccacatccatacacggcgtcggatttgtgatgttcaaataac |
195 |
Q |
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| T |
5985770 |
ttttatttattttctctctttcaatcatgtcgacagttgagca-----tgtttttataccacatccatatacggtgtcggatttgtgatgttcaaataac |
5985676 |
T |
|
| Q |
196 |
cctactctagtataaacaaggttgaacatgttgcaggccttcacacacttttgaacaatatttgtacacatggtagctatgtt |
278 |
Q |
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| T |
5985675 |
cctattctattacaaacaaggttgaacatgttgcaggccttcacatgcttttcaagaacattt-tacacatggtagctttgtt |
5985594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 278
Target Start/End: Complemental strand, 5936205 - 5936111
Alignment:
| Q |
184 |
tgttcaaataaccctactctagtataaacaaggttgaacatgttgcaggccttcacacacttttgaacaatatttgtacacatggtagctatgtt |
278 |
Q |
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|||||||||||| ||| | || || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
5936205 |
tgttcaaataacactattgtaatacaaacaaggttgaacaaattgcaggccttcacacacttttgaagaatatttgtacgcatggtagctttgtt |
5936111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 278
Target Start/End: Complemental strand, 5965449 - 5965292
Alignment:
| Q |
118 |
aatcatatcgacagttgagttgagtgtgtttatataccacatccatacacggcgtcggatttgtgatgttcaaataaccctactctagtataaacaaggt |
217 |
Q |
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|||||| |||||||||| ||||||| ||||| |||||| ||| || || || |||||||||||||||| ||||| ||||||| ||||| ||| || |
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| T |
5965449 |
aatcatgtcgacagttgggttgagtttgttttcataccatgtccgtatacagcttcggatttgtgatgtt---ataactctactctgttataaccaacgt |
5965353 |
T |
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| Q |
218 |
tgaacatgttgcaggccttcacacacttttgaacaatatttgtacacatggtagctatgtt |
278 |
Q |
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| T |
5965352 |
tgaacatgttgcaggccatcacacagttttgaagaatatatgcacatatggtagctttgtt |
5965292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 50615807 - 50615841
Alignment:
| Q |
225 |
gttgcaggccttcacacacttttgaacaatatttg |
259 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
50615807 |
gttgcaggccttcacacacttttgaataatatttg |
50615841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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