View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17515_high_30 (Length: 255)
Name: NF17515_high_30
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 2033861 - 2034105
Alignment:
| Q |
1 |
tccataattttttctctctctgattgactgcttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2033861 |
tccataattttttttctctctgattgactgcttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttga |
2033960 |
T |
|
| Q |
101 |
attgttgtcagaagcattaggtttgaatccaaaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2033961 |
attgttgtcagaagcattaggtttgaatccaaaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcct |
2034060 |
T |
|
| Q |
201 |
gaaccagaattgactgtcggaacaacaaagcattctgatgatgat |
245 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
2034061 |
gaaccagaattgactgtaggaacaacaaagcattctgataatgat |
2034105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 38 - 245
Target Start/End: Original strand, 2055039 - 2055246
Alignment:
| Q |
38 |
ttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccat |
137 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2055039 |
ttgcagagatatactgctacgatatgggaaacacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccat |
2055138 |
T |
|
| Q |
138 |
ttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2055139 |
ttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctg |
2055238 |
T |
|
| Q |
238 |
atgatgat |
245 |
Q |
| |
|
|| ||||| |
|
|
| T |
2055239 |
ataatgat |
2055246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 2050624 - 2050837
Alignment:
| Q |
32 |
ttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatcca |
131 |
Q |
| |
|
|||||||| ||||||| || | || ||||||||||| | ||||||||||||| |||||| ||||||||||| |||||||||| ||||| |||||||| |
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|
| T |
2050624 |
ttattcttacagagatgtaatactagaatatgggaaacaggtgatgaatctaggaactttactatttgaattgatgtcagaagctttaggactgaatcca |
2050723 |
T |
|
| Q |
132 |
aaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagc |
231 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2050724 |
aaccatctaaaagatatgggttgtgctgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagc |
2050823 |
T |
|
| Q |
232 |
attctgatgatgat |
245 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
2050824 |
attctgataatgat |
2050837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 2029335 - 2029535
Alignment:
| Q |
34 |
attcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaa |
133 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| | ||||||||||||| ||||| | ||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
2029335 |
attcttgcagagatatactactagaatatgggaaacaggtgatgaatctaggaactttgctgtttgaattgttgtcacaagctttaggtttgaatccaaa |
2029434 |
T |
|
| Q |
134 |
ccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcat |
233 |
Q |
| |
|
|||| | |||||||||| |||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2029435 |
ccatctaaaagatatgggttgtgccgaagggctaattgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaacaaagcat |
2029534 |
T |
|
| Q |
234 |
t |
234 |
Q |
| |
|
| |
|
|
| T |
2029535 |
t |
2029535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 2057883 - 2058070
Alignment:
| Q |
58 |
aatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccatttgaaagatatggattgtgc |
157 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
2057883 |
aatatgggaaacaagtgatgaatctaggaactttactgtttgaattgttgtcagaagctttaggtttgaatccaaaccatctaaaagatatgggttgtgc |
2057982 |
T |
|
| Q |
158 |
tgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgatgatgat |
245 |
Q |
| |
|
||||||||| ||||||||||| ||||| || ||| ||| ||| ||||||||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
2057983 |
tgaagggctaattgctctttgtcattattatccttcttatcccgaaccagaattgactgtgggaacaaccaagcattctgataatgat |
2058070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 2046709 - 2046915
Alignment:
| Q |
32 |
ttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatcca |
131 |
Q |
| |
|
||||||||||||||||||| | || ||||||| ||| ||||||||||||||||||||||||| ||||||||||| || |||| ||||||||| ||||| |
|
|
| T |
2046709 |
ttattcttgcagagatataatactagaatatggaaaacacatgatgaatctagggactttattgtttgaattgttatctgaagatttaggtttgcatcca |
2046808 |
T |
|
| Q |
132 |
aaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagc |
231 |
Q |
| |
|
|| ||| | ||||||||||||||| || ||||| | |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
2046809 |
aatcatctaaaagatatggattgtactcaagggttatttgctctttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagt |
2046908 |
T |
|
| Q |
232 |
attctga |
238 |
Q |
| |
|
||||||| |
|
|
| T |
2046909 |
attctga |
2046915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 1948823 - 1948619
Alignment:
| Q |
31 |
cttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatcc |
130 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||| || ||||||||||||||||| | || |||||||| ||||||||||||||||||||||| || |
|
|
| T |
1948823 |
cttattcttacagagatataaccctagaatatgggaaacacgtgatgaatctagggactatgttgtttgaatttttgtcagaagcattaggtttgaaacc |
1948724 |
T |
|
| Q |
131 |
aaaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaag |
230 |
Q |
| |
|
||||||| | |||||||||| |||| ||||||||||||||||| |||||||||| || ||| ||||||||||||||||| ||||| | |||||||| ||| |
|
|
| T |
1948723 |
aaaccatctaaaagatatgggttgtactgaagggctgattgctgtttgccattattatccttcttgtcctgaaccagaactgactatgggaacaactaag |
1948624 |
T |
|
| Q |
231 |
cattc |
235 |
Q |
| |
|
||||| |
|
|
| T |
1948623 |
cattc |
1948619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 2037462 - 2037659
Alignment:
| Q |
38 |
ttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccat |
137 |
Q |
| |
|
||||||||||||||| || ||||||| ||| |||||| ||||||||||| ||| | ||| ||||||| |||||||| |||||| |||||||||||||| |
|
|
| T |
2037462 |
ttgcagagatatacttctagaatatggaaaacacatgacaaatctagggaccttactgttttaattgttatcagaagctttaggtctgaatccaaaccat |
2037561 |
T |
|
| Q |
138 |
ttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattc |
235 |
Q |
| |
|
| |||||||||||||||||| |||| || |||||||||||||||| || ||| ||||||| ||||||||||||||||| |||||| | |||||||| |
|
|
| T |
2037562 |
ctaaaagatatggattgtgctaaaggactatttgctctttgccattattatccttcttgtccggaaccagaattgactgtgggaacagccaagcattc |
2037659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 245
Target Start/End: Original strand, 10768363 - 10768570
Alignment:
| Q |
38 |
ttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatccaaaccat |
137 |
Q |
| |
|
||||||||||||| || || ||||||| ||| |||||| || |||||||||||||| |||||| | | |||||||| |||||| |||||||||||||| |
|
|
| T |
10768363 |
ttgcagagatatattgctagaatatggaaaacacatgagaaacctagggactttattgtttgaactatgctcagaagctttaggtctgaatccaaaccat |
10768462 |
T |
|
| Q |
138 |
ttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctg |
237 |
Q |
| |
|
| |||||||| |||||||||||||| | ||||||| | ||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
10768463 |
ctaaaagatattgattgtgctgaaggattacttgctctcggtcattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctg |
10768562 |
T |
|
| Q |
238 |
atgatgat |
245 |
Q |
| |
|
|| ||||| |
|
|
| T |
10768563 |
ataatgat |
10768570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 48907118 - 48906912
Alignment:
| Q |
32 |
ttattcttgcagagatatactgttacaatatgggaaatacatgatgaatctagggactttattatttgaattgttgtcagaagcattaggtttgaatcca |
131 |
Q |
| |
|
||||||||||||||| |||||| || ||||| | ||| | |||||||| || || |||| ||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
48907118 |
ttattcttgcagagacatactgatagaatatagtaaacaaatgatgaacctgggatttttactatttgaattgctgtcagaagctttaggtctgaatcca |
48907019 |
T |
|
| Q |
132 |
aaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagc |
231 |
Q |
| |
|
|||||| | |||||||||| ||||| ||||||||| |||||| ||||||||| || ||||| || ||||||||||| |||||||| ||| || ||||| |
|
|
| T |
48907018 |
aaccatctaaaagatatgggttgtgttgaagggctaattgctgcttgccattattatcctccatgccctgaaccagatttgactgtgggactaaaaaagc |
48906919 |
T |
|
| Q |
232 |
attctga |
238 |
Q |
| |
|
||||||| |
|
|
| T |
48906918 |
attctga |
48906912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 28783587 - 28783475
Alignment:
| Q |
127 |
atccaaaccatttgaaagatatggattgtgctgaagggctgattgctctttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaac |
226 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| | ||| | | | ||| | |||||||| ||| ||||||||||||||||||| ||| | ||||| || |
|
|
| T |
28783587 |
atccaaaccatttaaaagacatgggttgtgctaaggggattctatcacttagtcattactatcctgcttgtcctgaaccagaattaactatgggaaccac |
28783488 |
T |
|
| Q |
227 |
aaagcattctgat |
239 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
28783487 |
aaaacattctgat |
28783475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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