View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_high_33 (Length: 250)
Name: NF17515_high_33
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 4652331 - 4652568
Alignment:
| Q |
2 |
tccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaattcaaaacaat-- |
94 |
Q |
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| T |
4652331 |
tccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaaatagtctcaaatgcaacatcatctccattacgttggtacaattcaaaacaatat |
4652430 |
T |
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| Q |
95 |
---gatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttggaaaacttacaaag |
191 |
Q |
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| T |
4652431 |
aatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtaaatacaaattggaagcatgagttttcatccttggaaaacttacaaag |
4652530 |
T |
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| Q |
192 |
tcgtaaaagatcattaacatcaccattcatgttatctt |
229 |
Q |
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| T |
4652531 |
ttgtaaaagatcattaacatcaccattcatgttatctt |
4652568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 16149735 - 16149968
Alignment:
| Q |
1 |
ctccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagtct-----gcaacatcatctccattacgttggtacaattcaaaacaatg |
95 |
Q |
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| T |
16149735 |
ctccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccatactgttggtacaattcaaaacaatg |
16149834 |
T |
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| Q |
96 |
atgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttggaaaacttacaaagtcgt |
195 |
Q |
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| T |
16149835 |
aggtggagaccaaaatatattttctagtcttttttctttatcaaccgtaaattcaaattggaagcatgagttttcttccttggataacttacaaagttgt |
16149934 |
T |
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| Q |
196 |
aaaagatcattaacatcaccattcatgttatctt |
229 |
Q |
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| T |
16149935 |
aaaagatcattagcatcaccattcatgttatctt |
16149968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 23302321 - 23302273
Alignment:
| Q |
4 |
caacaaaaatgccaaaaggcatattataagtatgtaccttgtaagtagt |
52 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23302321 |
caacaaagatgccaaaaggcatattataagtatttaccttgtaagtagt |
23302273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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