View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_high_34 (Length: 245)
Name: NF17515_high_34
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 18152018 - 18152129
Alignment:
| Q |
126 |
cacaaggtacgtacggttataaataaatatttatttgttactgaattgaccacagaccaattcccttgttgatttgggagtattcaatacacccatgaat |
225 |
Q |
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| T |
18152018 |
cacaaggtacgtacggttataaataaatatttatttgttactgaattgaccatagaccaattcccttattgatttgggagtattcaatacacccatgaat |
18152117 |
T |
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| Q |
226 |
tctgagcttcat |
237 |
Q |
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| T |
18152118 |
tctgagcttcat |
18152129 |
T |
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Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 28372369 - 28372258
Alignment:
| Q |
126 |
cacaaggtacgtacggttataaataaatatttatttgttactgaattgaccacagaccaattcccttgttgatttgggagtattcaatacacccatgaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28372369 |
cacaaggtacgtacggttataaataaatatttatttgttactgaattgaccatagaccaattcccttattgatttgggagtattcaatacacccatgaat |
28372270 |
T |
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| Q |
226 |
tctgagcttcat |
237 |
Q |
| |
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|||||||||||| |
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| T |
28372269 |
tctgagcttcat |
28372258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 28380191 - 28380080
Alignment:
| Q |
126 |
cacaaggtacgtacggttataaataaatatttatttgttactgaattgaccacagaccaattcccttgttgatttgggagtattcaatacacccatgaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28380191 |
cacaaggtacgtacggttataaataaatatttatttgttactgaattgaccatagaccaattcccttattgatttgggagtattcaatacacccatgaat |
28380092 |
T |
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| Q |
226 |
tctgagcttcat |
237 |
Q |
| |
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|||||||||||| |
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| T |
28380091 |
tctgagcttcat |
28380080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 8677554 - 8677590
Alignment:
| Q |
127 |
acaaggtacgtacggttataaataaatatttatttgt |
163 |
Q |
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| T |
8677554 |
acaaggtacgtacaattataaataaatatttatttgt |
8677590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 6627171 - 6627284
Alignment:
| Q |
1 |
ctagaaaattgattatttagaactaaaccaaaaattaaaataaaggaaaggctaggaacaccggttaaaaaagcaaatataatactttttgtgttaaaat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
6627171 |
ctagaaaattgattatttagaactaaatcaaaaattaaaataaaggaaaggctaggaacaccggttaaaaaaacaaatataatactttttgtattaaaat |
6627270 |
T |
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| Q |
101 |
tattgattactcat |
114 |
Q |
| |
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|||||||||||||| |
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|
| T |
6627271 |
tattgattactcat |
6627284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 18223160 - 18223124
Alignment:
| Q |
136 |
gtacggttataaataaatatttatttgttactgaatt |
172 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |
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| T |
18223160 |
gtacagttataaataagtatttatttgttactgaatt |
18223124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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