View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17515_high_37 (Length: 231)

Name: NF17515_high_37
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17515_high_37
NF17515_high_37
[»] chr4 (3 HSPs)
chr4 (123-214)||(30876871-30876962)
chr4 (13-83)||(30876711-30876781)
chr4 (73-115)||(30876781-30876823)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 30876871 - 30876962
Alignment:
Q  123 ctttggagaagatgcaggcatacatgatcagtaccaaatccatctaattgggatttgtgaagctatgcttagaaggaaatacccaataaaat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30876871 ctttggagaagatgcaggcatacatggtcagtaccaaatccatctaattgggacttgtgaagctatgcttagaaggaaatacccaataaaat 30876962  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 30876711 - 30876781
Alignment:
Q  13 ttatactccaaattttcaagctcccaacacttcttcaatacaagatgagatggataatggaaaatgctaat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30876711 ttatactccaaattttcaagctcccaacacttcttcaatacaagatgagatggataatggaaaatgctaat 30876781  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 30876823 - 30876781
Alignment:
Q  73 aaaatgctaatgaattttaattgctcaagaaatatgtcttcaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30876823 aaaatgctaatgaattttaattgctcaagaaatatgtcttcaa 30876781  T

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