View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_high_40 (Length: 218)
Name: NF17515_high_40
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 3954613 - 3954801
Alignment:
| Q |
15 |
cacagaaatatcttcaataggaaacaaagatttcaatccttcactagtcatcttagtcctgnnnnnnnttaaacactctcaaatcacataaatgaataaa |
114 |
Q |
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| T |
3954613 |
cacagaaatatcttcaataggaaacaaagatttcaatccttcactagtcatcttagtcctgaaaaaaattaaacactctcaaatcacataaatgaataaa |
3954712 |
T |
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| Q |
115 |
attcctcaaccattttcatataatttacagaagagcgataaaagaaggaaa-ttttaccctccaataccggaaaatcgaacagggaaag |
202 |
Q |
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| T |
3954713 |
attcctcaaccattttcatataatttacagaagagcgataaaagaaggaaacttttaccctccaataccggaaaatcgaacagggaaag |
3954801 |
T |
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