View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17515_high_7 (Length: 457)
Name: NF17515_high_7
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 1581128 - 1581550
Alignment:
| Q |
18 |
gtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581128 |
gtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctac |
1581227 |
T |
|
| Q |
118 |
tcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaactctactttgtttatgcgattctggaagcttgatgaagaagactttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1581228 |
tcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaactgtactttgtttatgcgattctggaagcttgatgaagaagac-ttg |
1581326 |
T |
|
| Q |
218 |
aaatagtttataaggagatggaccagtatcagcctcttgaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581327 |
aaatagtttataaggagatggaccagtatcagcctctggaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattg |
1581426 |
T |
|
| Q |
318 |
gtattcaatttgattatgaacaacttgtaaaagtattttattttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1581427 |
gtattcaatttgattatgaacaacttgtaaaagtatt---ttttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaa |
1581523 |
T |
|
| Q |
418 |
tgttttatactgtttacattattatct |
444 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1581524 |
tgttttatactgtttacattattatct |
1581550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 1603687 - 1603265
Alignment:
| Q |
18 |
gtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603687 |
gtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctac |
1603588 |
T |
|
| Q |
118 |
tcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaactctactttgtttatgcgattctggaagcttgatgaagaagactttg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1603587 |
tcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaactgtactttgtttatgcgattctggaagcttgatgaagaagac-ttg |
1603489 |
T |
|
| Q |
218 |
aaatagtttataaggagatggaccagtatcagcctcttgaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603488 |
aaatagtttataaggagatggaccagtatcagcctctggaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattg |
1603389 |
T |
|
| Q |
318 |
gtattcaatttgattatgaacaacttgtaaaagtattttattttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603388 |
gtattcaatttgattatgaacaacttgtaaaagtatt---ttttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaa |
1603292 |
T |
|
| Q |
418 |
tgttttatactgtttacattattatct |
444 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1603291 |
tgttttatactgtttacattattatct |
1603265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 1587638 - 1587763
Alignment:
| Q |
46 |
aaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattaggtaatagctataaa |
145 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||| ||||| |||||||||||| ||||||||||||| |||| ||||| || |||| || | |||||| |
|
|
| T |
1587638 |
aaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcactttgtacttgacaataaccaggtgat-gttataaa |
1587736 |
T |
|
| Q |
146 |
cttgtttatttgtttctgcatttaact |
172 |
Q |
| |
|
|| ||||||| ||||||||||||||| |
|
|
| T |
1587737 |
ctcgtttattattttctgcatttaact |
1587763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 1613920 - 1613865
Alignment:
| Q |
368 |
cacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgtttta |
424 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
1613920 |
cacgtagt-tttgagttgattcttctagttttaagttgctgcataaaaaatgtttta |
1613865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 39615847 - 39615670
Alignment:
| Q |
19 |
tacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctact |
118 |
Q |
| |
|
||||| |||||||||||| | ||||| |||| |||||||||| ||||||| ||||||| ||||| ||||||||||||| ||||||||| ||| |||| |
|
|
| T |
39615847 |
tacaaaattggaaacatgctgtgaggggaaatggttttgaaataggtcaaatactcaacgtttggtcatttagggtcaaggacaagttgcagtttgtact |
39615748 |
T |
|
| Q |
119 |
cgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact-ctactttgtttatgcgattctgg |
195 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
39615747 |
caacattaattaggtaatagctataaacttgtttatttctttctgcatttaactagtactttgtttatgcgtttctgg |
39615670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 19270147 - 19270025
Alignment:
| Q |
46 |
aaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattaggtaatagctataaa |
145 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||| ||||| |||||||||||| ||||||||||||| |||||||||| ||| |||| || | |||||| |
|
|
| T |
19270147 |
aaaatagttttgaaaagggtaaaaaacttaacatctggacttttagggtcaatgacaagttgcactttgtactcgacaataatcaggtgat-gttataaa |
19270049 |
T |
|
| Q |
146 |
cttgtttatttgtttctgcattta |
169 |
Q |
| |
|
| ||||||| |||||||||||| |
|
|
| T |
19270048 |
cgcgtttattattttctgcattta |
19270025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University