View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17515_high_8 (Length: 453)

Name: NF17515_high_8
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17515_high_8
NF17515_high_8
[»] chr8 (3 HSPs)
chr8 (13-437)||(2033462-2033882)
chr8 (248-323)||(2054811-2054886)
chr8 (168-225)||(10768176-10768233)
[»] scaffold0515 (1 HSPs)
scaffold0515 (293-370)||(10090-10167)
[»] scaffold0152 (2 HSPs)
scaffold0152 (293-370)||(27710-27787)
scaffold0152 (293-370)||(36486-36563)
[»] scaffold0055 (8 HSPs)
scaffold0055 (293-370)||(17937-18014)
scaffold0055 (293-370)||(20672-20749)
scaffold0055 (293-370)||(23911-23988)
scaffold0055 (293-370)||(37144-37221)
scaffold0055 (293-370)||(44993-45070)
scaffold0055 (293-370)||(57718-57795)
scaffold0055 (293-370)||(29249-29326)
scaffold0055 (293-370)||(76409-76485)
[»] scaffold0052 (8 HSPs)
scaffold0052 (293-370)||(8900-8977)
scaffold0052 (293-370)||(12102-12179)
scaffold0052 (293-370)||(16542-16619)
scaffold0052 (293-370)||(20915-20992)
scaffold0052 (293-370)||(39836-39913)
scaffold0052 (293-370)||(55322-55399)
scaffold0052 (293-370)||(43312-43388)
scaffold0052 (293-370)||(66739-66816)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Complemental strand, 2033882 - 2033462
Alignment:
Q  13 cagagagagaaaaaattatggattaaattcagtttcatacttttcatagtttgtatcagttggtttttatactactatatgtgatttgtttcttataaat 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2033882 cagagagaaaaaaaattatggattaaattcagtttcatacttttcatagtttgtatcagttggtttttatactactatatgtgatttgtttcttataaat 2033783  T
Q  113 agacctttcatctcatgtgaaatagatgcaattctagtgactatgaaaaggatatatcaaagctatttcaccgattaatacacctcaaaataaggatatg 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2033782 agacctttcatctcatgtgaaatagatgcaattctagtgaatatgaaaaggatatatcaaagctatttcaccgattaatacacctcaaaataaggatatg 2033683  T
Q  213 aaagcaatttcacaaatgaaaacacattttcttatatataagacaaaattagagatattagaaaaaggctaagcttgagtacgacttaaatacgcagcga 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||    
T  2033682 aaagcaatttcacaaatgaaaacacattttcttatatataagacaaaattagagatattagaaaaag-----gcttgagtacgacttaaatacgctgcga 2033588  T
Q  313 agtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgttaagttgttacttcgactagtcc-nnnnnnnnnnngtggcta 411  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||    
T  2033587 agtattgtaagtcgtagaatggccttactgccacgattcactgaaatttagtccttgttaagttgttacttcgactagtccaaaaaaaaaaaagtggcta 2033488  T
Q  412 agtattggagacgatttcgacacatt 437  Q
    ||||||||||||||||||||||||||    
T  2033487 agtattggagacgatttcgacacatt 2033462  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 2054886 - 2054811
Alignment:
Q  248 atataagacaaaattagagatattagaaaaaggctaagcttgagtacgacttaaatacgcagcgaagtattgtaag 323  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  2054886 atatatgacaagattagagatattagaaaaaggctaagcttgagtatgacttaaataggcagcggagtattgtaag 2054811  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 10768233 - 10768176
Alignment:
Q  168 atcaaagctatttcaccgattaatacacctcaaaataaggatatgaaagcaatttcac 225  Q
    |||||||| | |||| | ||||||||| || |||||||||||||||||| ||||||||    
T  10768233 atcaaagccacttcatcaattaatacatctaaaaataaggatatgaaagtaatttcac 10768176  T

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Target: scaffold0515 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 10090 - 10167
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||| ||||||||||| | ||||||||||| |||||||||| |||||| |||||| ||||||    
T  10090 acgacttaaatacgcgacgaggtattgtaagtggcagagtggccttgctgccacgatccactgagatttagcccttgt 10167  T

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Target: scaffold0152 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 27710 - 27787
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||| ||||||||||| | ||||||||||| |||||||||| |||||| |||||| ||||||    
T  27710 acgacttaaatacgcgacgaggtattgtaagtggcagagtggccttgctgccacgatccactgagatttagcccttgt 27787  T

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Target: scaffold0152; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 36486 - 36563
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||| ||||||||||| | ||||||||||| |||||||||| |||||| |||||| ||||||    
T  36486 acgacttaaatacgcgacgaggtattgtaagtggcagagtggccttgctgccacgatccactgagatttagcccttgt 36563  T

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Target: scaffold0055 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 17937 - 18014
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  17937 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 18014  T

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Target: scaffold0055; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 20749 - 20672
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  20749 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 20672  T

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Target: scaffold0055; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 23988 - 23911
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  23988 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 23911  T

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Target: scaffold0055; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 37221 - 37144
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  37221 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 37144  T

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Target: scaffold0055; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 45070 - 44993
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  45070 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 44993  T

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Target: scaffold0055; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 57795 - 57718
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  57795 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 57718  T

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Target: scaffold0055; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 29249 - 29326
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  || |||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  29249 acgacttaaatacgcgacggggtgttgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 29326  T

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Target: scaffold0055; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 76485 - 76409
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  76485 acgacttaaatacgcgacggggtattgtaagt-gcagagtggccttgctgccacgatccactgagattcagcccttgt 76409  T

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Target: scaffold0052 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 8977 - 8900
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  8977 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 8900  T

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Target: scaffold0052; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 12179 - 12102
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  12179 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 12102  T

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Target: scaffold0052; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 16542 - 16619
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  16542 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 16619  T

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Target: scaffold0052; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 20992 - 20915
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  20992 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 20915  T

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Target: scaffold0052; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 39836 - 39913
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  39836 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 39913  T

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Target: scaffold0052; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 55399 - 55322
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  55399 acgacttaaatacgcgacggggtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 55322  T

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Target: scaffold0052; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 43388 - 43312
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  43388 acgacttaaatacgcgacggggtattgtaagt-gcagagtggccttgctgccacgatccactgagattcagcccttgt 43312  T

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Target: scaffold0052; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 66816 - 66739
Alignment:
Q  293 acgacttaaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 370  Q
    |||||||||||||||  ||  || |||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  66816 acgacttaaatacgcgacggggtgttgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 66739  T

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