View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17515_low_12 (Length: 450)

Name: NF17515_low_12
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17515_low_12
NF17515_low_12
[»] chr1 (17 HSPs)
chr1 (15-437)||(19342727-19343149)
chr1 (153-437)||(19334840-19335124)
chr1 (15-110)||(19334150-19334245)
chr1 (202-431)||(13508814-13509043)
chr1 (207-431)||(16466269-16466493)
chr1 (202-431)||(13656844-13657073)
chr1 (330-431)||(15897560-15897661)
chr1 (202-431)||(20370014-20370243)
chr1 (202-431)||(20479085-20479314)
chr1 (281-431)||(13612609-13612759)
chr1 (281-431)||(13687052-13687202)
chr1 (334-431)||(13545182-13545279)
chr1 (202-431)||(13672123-13672352)
chr1 (330-431)||(13589327-13589428)
chr1 (330-431)||(20488895-20488996)
chr1 (336-431)||(16495363-16495458)
chr1 (334-431)||(19136018-19136115)
[»] scaffold0068 (1 HSPs)
scaffold0068 (202-431)||(39031-39260)
[»] scaffold0783 (1 HSPs)
scaffold0783 (202-431)||(1113-1342)
[»] scaffold0006 (4 HSPs)
scaffold0006 (202-431)||(146605-146834)
scaffold0006 (334-431)||(58774-58871)
scaffold0006 (202-431)||(169737-169966)
scaffold0006 (202-431)||(220345-220574)
[»] scaffold0460 (1 HSPs)
scaffold0460 (330-431)||(9884-9985)
[»] scaffold0069 (2 HSPs)
scaffold0069 (325-431)||(28078-28184)
scaffold0069 (325-431)||(32193-32299)
[»] scaffold0012 (1 HSPs)
scaffold0012 (325-431)||(117333-117439)
[»] chr8 (2 HSPs)
chr8 (202-431)||(20812669-20812898)
chr8 (325-431)||(20792252-20792358)
[»] chr6 (2 HSPs)
chr6 (330-431)||(22282442-22282543)
chr6 (204-431)||(21816082-21816309)
[»] chr2 (2 HSPs)
chr2 (330-431)||(30703643-30703744)
chr2 (334-431)||(38056276-38056373)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Original strand, 19342727 - 19343149
Alignment:
Q  15 cacagatccttcagttcagggaattcagacaatgttaaatgttcaaattcacaaaatgcaacctgttaatcaaatattaagtgataagccaataatcaaa 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19342727 cacagatccttcagttcagggaattcagacaatcttaaatgttcaaattcacaaaatgcaacctgttaatcaaatattaagtgataagccaataatcaaa 19342826  T
Q  115 tattaagaaaatggagaattgattattttacnnnnnnnaaataaacaaatagagaattgatgttatgtaggaaatcaattggaaaatataagcatacctt 214  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19342827 tattaagaaaatggagaattgattattttattttttttaaataaacaaatagagaattgatgttatgtaggaaatcaattggaaaatataagcatacctt 19342926  T
Q  215 atcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaagaattggagagctc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19342927 atcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgcgcagttttcactttttgaagaattggagagctc 19343026  T
Q  315 acatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  19343027 acatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacagtggaagtttcaataagcacttaccagagcaaaatttgt 19343126  T
Q  415 tgagccttggcaaacatacaagc 437  Q
    |||||||||||||||||||||||    
T  19343127 tgagccttggcaaacatacaagc 19343149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 153 - 437
Target Start/End: Original strand, 19334840 - 19335124
Alignment:
Q  153 aaataaacaaatagagaattgatgttatgtaggaaatcaattggaaaatataagcataccttatcttcatacatattctttattttatcatttaggttcc 252  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19334840 aaataaacaaatagagaattgatgttacgtaggaaatcaattggaaaatataagcataccttatcttcatacatattctttattttatcatttaggttcc 19334939  T
Q  253 ctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaagaattggagagctcacatttccctcagagaaaatcttcatgcgaggacattc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19334940 ctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaagaattggagagctcacatttccctcagagaaaatcttcatgcgaggacattc 19335039  T
Q  353 tctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaacatacaagc 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19335040 tctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaatttgttgagccttggcaaacatacaagc 19335124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 19334150 - 19334245
Alignment:
Q  15 cacagatccttcagttcagggaattcagacaatgttaaatgttcaaattcacaaaatgcaacctgttaatcaaatattaagtgataagccaataat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||    
T  19334150 cacagatccttcagttcagggaattcagacaatgttaaatgttcaaattcacaaaatgcaacctgtaaatcaaatattaagtggtaagtcaataat 19334245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 13509043 - 13508814
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| |||||||||| |||| |||| || | |||| ||||||||||||| || ||| || ||||||    | ||| || |||| |||| |||||||||||    
T  13509043 ataaacataccttattttcaaacatgttgtatattgtatcatttaggtttcccttccaaagccattctgaatcattttctgcaattttaactttttgaag 13508944  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| |  || |  ||| || | || ||||||||||| ||||||||||| ||||||| |||||||||||| |||||||  ||||  || ||||||| |    
T  13508943 aattggtgtacttatgttttccgctgaaaaaatcttcatccgaggacattccctcacaattacttcctccaataatggaaacttcatgaaacacttacta 13508844  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    ||| |||| ||| |||| ||||||||||||    
T  13508843 gaggaaaatttgatgagacttggcaaacat 13508814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 431
Target Start/End: Original strand, 16466269 - 16466493
Alignment:
Q  207 cataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaagaattg 306  Q
    ||||||||||| ||| |||| || |||||| |||||||||||||  | ||| |||||||||   || ||| ||  ||| |||| | |||| ||||||| |    
T  16466269 cataccttatcctcaaacatgttgtttattgtatcatttaggttttccttccaatgccattcttcatcattttcagcaattttaatttttcgaagaatcg 16466368  T
Q  307 gagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagca 406  Q
    | |  || | ||||||||| || ||  ||||||||||||||||||| |  |||| |||||||| |||||||||||  ||||| ||||  |||| ||||||    
T  16466369 gtgtacttatatttccctctgaaaatttcttcatgcgaggacattcccgtacaattacttccttcaacaatggaaacttcaagaagccattactagagca 16466468  T
Q  407 aaagttgttgagccttggcaaacat 431  Q
    ||| |||||||| ||||||||||||    
T  16466469 aaatttgttgaggcttggcaaacat 16466493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 13657073 - 13656844
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||| |||| || | |||| |||| |||| ||| || ||| |||||||||    | ||| || |||| |||| |||||||||||    
T  13657073 ataaacataccttatcttcaaacatgttgtatattgtatcgtttaagtttcccttccaatgccattctgaatcattttctgcaattttgactttttgaag 13656974  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| | |||    | |||  |||| ||||||||||| |||| |||||| ||||||| ||||| ||||||||| ||||  ||||  || ||||||| |    
T  13656973 aattggtgtgcttgtgtctccagcagaaaaaatcttcatacgagaacattccctcacaattactttctccaacaacggaaacttcatgaaacacttacta 13656874  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| ||| |||| ||||||||||||    
T  13656873 gagcaaaatttgatgaggcttggcaaacat 13656844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 15897560 - 15897661
Alignment:
Q  330 aaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaac 429  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||||||||  ||||  || ||||||| ||||||||| |||  ||| ||||||||||    
T  15897560 aaaatcttcatgcgaggacattccctcacagttacttcctccaacaatggaaacttcatgaaacacttactagagcaaaatttgacgaggcttggcaaac 15897659  T
Q  430 at 431  Q
    ||    
T  15897660 at 15897661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 20370243 - 20370014
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||| |||| || | |||| |||| |||| ||| |||||| |||||||||    | ||| || |||| |||| |||||| ||||    
T  20370243 ataaacataccttatcttcaaacatgttgtatattgtatcgtttaagtttcctttccaatgccattctgaatcattttctgcaattttaacttttcgaag 20370144  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| | |||    | ||   |||| ||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||  || |||| ||||    
T  20370143 aattggtgtgcttgtgtctctggcagaaaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatgaaacactcacca 20370044  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| ||| |||| ||||||||||||    
T  20370043 gagcaaaacttgatgaggcttggcaaacat 20370014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 20479314 - 20479085
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||| |||| || | |||| |||| |||| ||| |||||| |||||||||    | ||| || |||| |||| |||||||||||    
T  20479314 ataaacataccttatcttcaaacatgttgtatattgtatcgtttaagtttcctttccaatgccattctgaatcattttctgcaattttgactttttgaag 20479215  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| | |||    | ||   |||| ||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||  || |||| || |    
T  20479214 aattggtgtgcttgtttctctggcagaaaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatgaaacactcacta 20479115  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| ||| |||| ||||||||||||    
T  20479114 gagcaaaacttgatgaggcttggcaaacat 20479085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 431
Target Start/End: Complemental strand, 13612759 - 13612609
Alignment:
Q  281 tgcagttttcactttttgaagaattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatgga 380  Q
    |||| |||| ||||||||||||||||| |  ||    |||||||| || |||||||||||  |||||||||| ||||||| |||||||||||| ||||||    
T  13612759 tgcaattttaactttttgaagaattggtgtacttgtgtttccctctgaaaaaatcttcatttgaggacattccctcacaattacttcctccaataatgga 13612660  T
Q  381 agtttcaataagcacttaccagagcaaaagttgttgagccttggcaaacat 431  Q
    |  ||||  || ||||||| |||| |||| ||| |||| ||||||||||||    
T  13612659 aacttcatgaaacacttactagaggaaaacttgatgagacttggcaaacat 13612609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 281 - 431
Target Start/End: Complemental strand, 13687202 - 13687052
Alignment:
Q  281 tgcagttttcactttttgaagaattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatgga 380  Q
    |||| |||| ||||||||||||||||| |  ||    |||||||| || |||||||||||  |||||||||| ||||||| |||||||||||| ||||||    
T  13687202 tgcaattttaactttttgaagaattggtgtacttgtgtttccctctgaaaaaatcttcatttgaggacattccctcacaattacttcctccaataatgga 13687103  T
Q  381 agtttcaataagcacttaccagagcaaaagttgttgagccttggcaaacat 431  Q
    |  ||||  || ||||||| |||| |||| ||| |||| ||||||||||||    
T  13687102 aacttcatgaaacacttactagaggaaaacttgatgagacttggcaaacat 13687052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 334 - 431
Target Start/End: Complemental strand, 13545279 - 13545182
Alignment:
Q  334 tcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaacat 431  Q
    ||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||  || ||||||| |||| |||| ||| |||| ||||||||||||    
T  13545279 tcttcatgcgaggacattccctcacaattacttcctccaataatggaaacttcatgaaacacttactagaggaaaacttgatgagacttggcaaacat 13545182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 13672352 - 13672123
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||| |||| || | |||| |||| |||| ||| |||||| |||||||||    | ||| ||||||| |||| |||||| ||||    
T  13672352 ataaacataccttatcttcaaacatgttgtatattgtatcgtttaagtttcctttccaatgccattctgaatcattttgtgcaattttaacttttcgaag 13672253  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| | |||    | |    |||||||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||  || |||| || |    
T  13672252 aattggtgtgcttgtgtctttggcagagaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatgaaacactcacta 13672153  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| |||  ||| ||||||||||||    
T  13672152 gagcaaaacttgacgaggcttggcaaacat 13672123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 13589428 - 13589327
Alignment:
Q  330 aaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaac 429  Q
    ||||||||||||||||||||||| | ||||| ||||| || |||||||||||  ||||  || |||| || ||||||||| ||| |||| ||||||||||    
T  13589428 aaaatcttcatgcgaggacattcccccacaattactttcttcaacaatggaaacttcatgaaacactcactagagcaaaacttgatgaggcttggcaaac 13589329  T
Q  430 at 431  Q
    ||    
T  13589328 at 13589327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 20488996 - 20488895
Alignment:
Q  330 aaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaac 429  Q
    ||||||||||||||||||||||| || |||| ||||||||||| ||||||||  ||||  || ||||||| ||||||||| |||  |||  |||||||||    
T  20488996 aaaatcttcatgcgaggacattcccttacaattacttcctccatcaatggaaacttcatgaaacacttactagagcaaaatttgacgaggtttggcaaac 20488897  T
Q  430 at 431  Q
    ||    
T  20488896 at 20488895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 431
Target Start/End: Original strand, 16495363 - 16495458
Alignment:
Q  336 ttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaacat 431  Q
    ||||||||||||||||| ||||| | ||||||||||||||| ||||  ||||||| ||  ||||  |||||||| |||||||| || |||||||||    
T  16495363 ttcatgcgaggacattccctcacgattacttcctccaacaacggaaacttcaatacgccattacttgagcaaaatttgttgaggctcggcaaacat 16495458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 19136018 - 19136115
Alignment:
Q  334 tcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||||||||||| || | ||||| ||||| ||||||||||||||  ||||  || ||||||| ||||||||| |||  ||| ||||||||||||    
T  19136018 tcttcatgcgaggacactcccccacaattactttctccaacaatggaaacttcatgaaacacttactagagcaaaatttgacgaggcttggcaaacat 19136115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 202 - 431
Target Start/End: Original strand, 39031 - 39260
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| |||||||||| |||| |||| || | |||| ||||||||||||| || ||| || ||||||    | ||| || |||| |||| |||||| ||||    
T  39031 ataaacataccttattttcaaacatgttgtatattgtatcatttaggtttcccttccaaagccattctgaatcattttctgcaattttaacttttcgaag 39130  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| |  || |  |||||| | || ||||||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||  || ||||||| |    
T  39131 aattggtgtacttatgtttcccgctgaaaaaatcttcatgcgaggacattccctcacaattacttcctccaataatggaaacttcatgaaacacttacta 39230  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    ||| |||| ||| | || ||||||||||||    
T  39231 gaggaaaacttgataagacttggcaaacat 39260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 1342 - 1113
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||| |||| || | |||| |||| |||| ||| || ||| |||||||||    | ||| || |||| |||| |||||||||||    
T  1342 ataaacataccttatcttcaaacatgttgtatattgtatcgtttaagtttcccttccaatgccattctgaatcattttctgcaattttaactttttgaag 1243  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| | |||    | ||   |||| ||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||  ||||  || |||| || |    
T  1242 aattggtgtgcttgtgtctctggcagaaaaaatcttcatgcgaggacattccctcacaattactttctccaacaacggaaacttcatgaaacactcacta 1143  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| ||| |||| ||||||||||||    
T  1142 gagcaaaacttgatgaggcttggcaaacat 1113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 146834 - 146605
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||| |||| || | |||| |||| |||| ||| || ||| |||||||||    | ||| || |||| |||| |||||||||||    
T  146834 ataaacataccttatcttcaaacatgttgtatattgtatcgtttaagtttcccttccaatgccattctgaatcattttctgcaattttgactttttgaag 146735  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| | |||    | |||  |||| ||||||||||| |||| |||||| ||||||| ||||| ||||||||| ||||  ||||  || ||||||| |    
T  146734 aattggtgtgcttgtgtctccagcagaaaaaatcttcatacgagaacattccctcacaattactttctccaacaacggaaacttcatgaaacacttacta 146635  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| ||| |||| ||||||||||||    
T  146634 gagcaaaatttgatgaggcttggcaaacat 146605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 334 - 431
Target Start/End: Complemental strand, 58871 - 58774
Alignment:
Q  334 tcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||||||||||||||  |||||| ||||||| ||||||||||||  ||||  || ||||||| |||| |||| ||| |||||||||||||||||    
T  58871 tcttcatgcgaggacattcaatcacaattacttccaccaacaatggaaacttcatgaaacacttactagaggaaaatttgatgagccttggcaaacat 58774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 169966 - 169737
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||| |||| || | |||| |||| |||| ||| |||||| |||||||||    | ||| ||||||| |||| |||||| ||||    
T  169966 ataaacataccttatcttcaaacatgttgtatattgtatcgtttaagtttcctttccaatgccattctgaatcattttgtgcaattttaacttttcgaag 169867  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| | |||    | |    |||||||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||  || |||| || |    
T  169866 aattggtgtgcttgtgtctttggcagagaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatgaaacactcacta 169767  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| |||  ||| ||||||||||||    
T  169766 gagcaaaacttgacgaggcttggcaaacat 169737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 220574 - 220345
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||| |||| || | |||| |||| |||| ||| |||||| ||| |||||    | ||| || |||| |||| |||||| ||||    
T  220574 ataaacataccttatcttcaaacatgttgtatattgtatcgtttaagtttcctttccaataccattctgaatcattttctgcaattttaacttttagaag 220475  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| | |||   || ||   |||| ||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||  || |||| || |    
T  220474 aattggtgtgcttgtatctctggcagaaaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatgaaacactcacaa 220375  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| ||| |||| ||||||||||||    
T  220374 gagcaaaacttgatgaggcttggcaaacat 220345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 9985 - 9884
Alignment:
Q  330 aaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaac 429  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||  ||||  || ||||||| ||||||||| |||  |||  |||||||||    
T  9985 aaaatcttcatgcgaggacattccctcacaattacttcctccatcaatggaaacttcatgaaacacttactagagcaaaatttgacgaggtttggcaaac 9886  T
Q  430 at 431  Q
    ||    
T  9885 at 9884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 431
Target Start/End: Complemental strand, 28184 - 28078
Alignment:
Q  325 cagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttgg 424  Q
    |||| ||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||   | ||||||| ||||||||| ||| |||| |||||    
T  28184 cagaaaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatggaacacttactagagcaaaacttgatgagacttgg 28085  T
Q  425 caaacat 431  Q
    |||||||    
T  28084 caaacat 28078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 431
Target Start/End: Complemental strand, 32299 - 32193
Alignment:
Q  325 cagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttgg 424  Q
    |||| ||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||   | ||||||| ||||||||| ||| |||| |||||    
T  32299 cagaaaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatggaacacttactagagcaaaacttgatgagacttgg 32200  T
Q  425 caaacat 431  Q
    |||||||    
T  32199 caaacat 32193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 431
Target Start/End: Complemental strand, 117439 - 117333
Alignment:
Q  325 cagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttgg 424  Q
    |||| ||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||  || |||| || ||||||||| ||| |||| |||||    
T  117439 cagaaaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatgaaacactcactagagcaaaacttgatgaggcttgg 117340  T
Q  425 caaacat 431  Q
    |||||||    
T  117339 caaacat 117333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 431
Target Start/End: Original strand, 20812669 - 20812898
Alignment:
Q  202 ataagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaag 301  Q
    |||| ||||||||||||||  |||| || | |||| |||  |||||||| || ||| |||||||||    ||||| || |||| |||| |||||||||||    
T  20812669 ataaacataccttatcttcgaacatgttgtatattgtattgtttaggtttcccttccaatgccattctgaaacattttctgcaattttaactttttgaag 20812768  T
Q  302 aattggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttacca 401  Q
    |||||| |  ||    | |||  |||| ||||||||||||||||||||||| | ||||| ||||| ||||||||| ||||  ||||  || |||| || |    
T  20812769 aattggtgtacttgtgtctccgacagaaaaaatcttcatgcgaggacattcccccacaattactttctccaacaacggaaacttcatgaaacactaacta 20812868  T
Q  402 gagcaaaagttgttgagccttggcaaacat 431  Q
    |||||||| |||  ||| ||||||||||||    
T  20812869 gagcaaaacttgaagagacttggcaaacat 20812898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 431
Target Start/End: Original strand, 20792252 - 20792358
Alignment:
Q  325 cagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttgg 424  Q
    |||| ||||||||||| ||||||||||| | ||||| ||||| ||||||| | ||||  ||||  || || ||  |||||||||| ||| |||| |||||    
T  20792252 cagaaaaaatcttcatacgaggacattcccccacaattactttctccaacgacggaaacttcatgaaacatttgacagagcaaaacttgatgaggcttgg 20792351  T
Q  425 caaacat 431  Q
    |||||||    
T  20792352 caaacat 20792358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 22282442 - 22282543
Alignment:
Q  330 aaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaac 429  Q
    ||||||||||| ||||||||||| ||||||| ||||||||| ||| || |||  ||||| | |||||||| ||||||||| |||  ||| ||||||||||    
T  22282442 aaaatcttcatccgaggacattccctcacaaatacttcctctaacgatagaaacttcaagatgcacttactagagcaaaatttgacgaggcttggcaaac 22282541  T
Q  430 at 431  Q
    ||    
T  22282542 at 22282543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 431
Target Start/End: Complemental strand, 21816309 - 21816082
Alignment:
Q  204 aagcataccttatcttcatacatattctttattttatcatttaggttccctttcaaatgccatttcccaacatcttgtgcagttttcactttttgaagaa 303  Q
    |||||||||||||||||| |||| || | |||| |||  |||||||| || ||| |||||||||    | ||| || |||| |||| |||||| ||||||    
T  21816309 aagcataccttatcttcaaacatgttgtatattgtattgtttaggtttcccttccaatgccattctgaatcattttctgcaattttgacttttcgaagaa 21816210  T
Q  304 ttggagagctcacatttccctcagagaaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccaga 403  Q
    |||| | |||    | |||  |||| ||||||||||| | || |||||| ||||||| ||||| ||||||||| || |  ||||  || ||||||| |||    
T  21816209 ttggtgtgcttgtgtctccagcagaaaaaatcttcatacaagaacattccctcacaattactttctccaacaaagggaacttcatgaaacacttactaga 21816110  T
Q  404 gcaaaagttgttgagccttggcaaacat 431  Q
    |||||| ||| |||| ||||||||||||    
T  21816109 gcaaaacttgatgaggcttggcaaacat 21816082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 30703643 - 30703744
Alignment:
Q  330 aaaatcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaac 429  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||| |||||  ||||  || ||||||| |||| |||| |||  ||| ||||||||||    
T  30703643 aaaatcttcatgcgaggacattcactcacagttacttcctccaacactggaaacttcatgaaacacttactagagaaaaatttgacgaggcttggcaaac 30703742  T
Q  430 at 431  Q
    ||    
T  30703743 at 30703744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 38056276 - 38056373
Alignment:
Q  334 tcttcatgcgaggacattctctcacaactacttcctccaacaatggaagtttcaataagcacttaccagagcaaaagttgttgagccttggcaaacat 431  Q
    ||||||||||||||||||| ||||||| ||| | ||||||||||||||  ||||  || ||||| | ||||||||| ||| |||  || |||||||||    
T  38056276 tcttcatgcgaggacattccctcacaattacattctccaacaatggaaacttcatgaaacacttgctagagcaaaatttgatgattctgggcaaacat 38056373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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