View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_13 (Length: 445)
Name: NF17515_low_13
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 42223719 - 42224137
Alignment:
| Q |
11 |
cacagaaaacaatgttccaattccatttggtatctgagaattaacaaagaacaacagcaatggtcattcattagctttacgtctatttcatcaatatgtc |
110 |
Q |
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| T |
42223719 |
cacagaaaacaatgttccaattccatttggtatctgagagttaacaaagaacaacaacaatggtcattcattagctttacgtctatttcatcaatatgtc |
42223818 |
T |
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| Q |
111 |
gaggnnnnnnnnnnnnnnnnnnnnggatttagcttgtttacagtgatgaatttgtcgaaagggaggagagagtaagttgtccaagccacaccatttccaa |
210 |
Q |
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| T |
42223819 |
gaggaaaaaggaaaaaaagcaaaaggatttagtttgtttacagtgatgaatttgtcgaaagggaggagagagtaagttgtccaagccacaccatttccaa |
42223918 |
T |
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| Q |
211 |
aggaagcaagagatatggagagcggcatgtactcaatgcttttagtcatgatcaccagtttctgcaaagcaatagtaaattttatcaaatacttcaaatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223919 |
aggaagcaagagatatggagagcggcatgtactcaatgcttttagtcatgatcaccagtttctgcaaagcaatagtaaattttatcaaatacttcaaatt |
42224018 |
T |
|
| Q |
311 |
caataaaaacgcttccaaacaaaaaattaagattaagtgtttgtttgatgattacataccatcacagctaaaggtgcaacatacatcataatgttgaaga |
410 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224019 |
caataaaaacgcatccaaaccaaaaattaagattaagtgtttgtttgatgattacataccatcacagctaaaggtgcaacatacatcataatgttgaaga |
42224118 |
T |
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| Q |
411 |
caatgcatgtcgtaccaac |
429 |
Q |
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| T |
42224119 |
caatgcatgtcgtaccaac |
42224137 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 36675959 - 36675871
Alignment:
| Q |
189 |
gtccaagccacaccatttccaaaggaagcaagagatatggagagcggcatgtactcaatgcttttagtcatgatcaccagtttctgcaa |
277 |
Q |
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| T |
36675959 |
gtccaagaaacaccattgccaaatgaagctaaagataggaaaaacggcatgaactcaacacttttagtcttgatcactagtttctgcaa |
36675871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 36686041 - 36685953
Alignment:
| Q |
189 |
gtccaagccacaccatttccaaaggaagcaagagatatggagagcggcatgtactcaatgcttttagtcatgatcaccagtttctgcaa |
277 |
Q |
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| T |
36686041 |
gtccaagaaacaccattgccaaatgaagctaaagataggaaaaacggcatgaactcaacacttttagtcttgatcactagtttctgcaa |
36685953 |
T |
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