View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_18 (Length: 383)
Name: NF17515_low_18
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 4560819 - 4561176
Alignment:
| Q |
13 |
aatatgccactgcacaaagttatatagaattaaacttcatcaaatttagtactcttaacacactcccctcacgctcaagactggacatatgtagcgtgtg |
112 |
Q |
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| T |
4560819 |
aatatgccactgcacaaagttatatagaattaaacttcatcaaatttattactcttaacacactcccctcacgctcaagactggacatatgtagcgtgtg |
4560918 |
T |
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| Q |
113 |
acccgattggtccgatataaggtggcctacggatattgggtaggttatgatactatcacaaagttatatagaactaaactcatatacaaatgtaggactt |
212 |
Q |
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| T |
4560919 |
acccgattggtccgatataaggtggcctatggatattgggtaggttatgatactatcacaaagttatatagaactaaactcatatacaaatgtaggactt |
4561018 |
T |
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| Q |
213 |
ttaacacacacacctcgctcaagaccggacatatgtatagcgatccgatgaaggtggccgaacattgactaagttcttatagcattttataatttgggat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4561019 |
ttaacacacacacctcgctcaagaccggacatatgtatagcgatccgatgaaggtggccgaacattgactaagttcttatagcatcttataatttgggat |
4561118 |
T |
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| Q |
313 |
gaacctaactctaccctacaaaatcggctagttaggtgatgattgtaagccatatata |
370 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4561119 |
gaacctaactctaccctacaaaatcggcttgttaggtgatgattgtaagccatatata |
4561176 |
T |
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