View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17515_low_19 (Length: 372)
Name: NF17515_low_19
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 23 - 352
Target Start/End: Complemental strand, 8857699 - 8857370
Alignment:
| Q |
23 |
aaaaatggattggtaacatatatgtgtaagccgaaccatgtagggggattttgggtctcaaaactttgaaagttttctttaaatcacagaccaattgatc |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8857699 |
aaaaatggattggtaacatatatgtgtaagccgaatcatgtagagggattttgggtctcaaaactttgaaagttttctttaaatcacagaccaattgatc |
8857600 |
T |
|
| Q |
123 |
catatgtttaaaacaatgtaaatagacacatggtttgcgattatcgaacaaagatttaaaatgttagagtcaaatttatattttgaaaatatttgatttt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8857599 |
catatgtttaaaacaatgtaaatagacacatgatttgctattatcgaacaaagattcaaaatgttagagtcaaatttatattttgaaaatatttcatttt |
8857500 |
T |
|
| Q |
223 |
atacatgatgttgatctgttgtctaatatttgaaaatgaggaattgactactagattgacacaataaagttgtatgtgaatttgtgactgttttttggac |
322 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
8857499 |
attcatgattttgatctgttgtctaatatttgaaaatgagaaattgaatactagattgacacaataaaattgtatgtgaatttgtgacggttgtttggac |
8857400 |
T |
|
| Q |
323 |
ataatttcttttgtaaatgatgtacacaca |
352 |
Q |
| |
|
||||||| ||||||||||| || ||||||| |
|
|
| T |
8857399 |
ataattttttttgtaaatgttgcacacaca |
8857370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 8875208 - 8875118
Alignment:
| Q |
10 |
aagaaaattttc--aaaaaatggattggtaacatatatgtgtaagccgaaccatgtagggggattttgggtctcaaaactttgaaagtttt |
98 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| ||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
8875208 |
aagaaaattttcgaaaaaaatggtttggtaacagatatgtgtaggccgaatcatgtaggggaattttgggcctcaaaactttgaatgtttt |
8875118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 8860296 - 8860385
Alignment:
| Q |
10 |
aagaaaattttc-aaaaaatggattggtaacatatatgtgtaagccgaaccatgtagggggattttgggtctcaaaactttgaaagtttt |
98 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| ||| || |||||||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
8860296 |
aagaaaattttcgaaaaaatggtttggtaacatatatgtgtaggccaaatcatgtaggggaattttgggcctcaaaactttaaatgtttt |
8860385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 17753524 - 17753461
Alignment:
| Q |
152 |
atggtttgcgattatcgaacaaagatttaaaatgttagagtcaaatttatattttgaaaatatt |
215 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||| ||||| ||| | ||||||||||||||| |
|
|
| T |
17753524 |
atggtttgcgattatcgaacaaatattcaaaaagtttgagtcgaatctttattttgaaaatatt |
17753461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 8858172 - 8858084
Alignment:
| Q |
10 |
aagaaaattttc-aaaaaatggattggtaacatatatgtgtaagccgaaccatgtagggggattttgggtctcaaaactttgaaagtttt |
98 |
Q |
| |
|
|||||||||||| ||||||||| |||||| | |||||||||| |||| | ||||||||| || ||||| ||| |||||||||||||||| |
|
|
| T |
8858172 |
aagaaaattttcgaaaaaatggtttggtagcgtatatgtgtagaccgatc-atgtaggggaatattgggcctccaaactttgaaagtttt |
8858084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University