View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_21 (Length: 369)
Name: NF17515_low_21
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 25569201 - 25569553
Alignment:
| Q |
1 |
tggtgatgaaaatgaatccagctcttcagaagtggaacacatggacgaaaatattagcactgctaggtgttgtggattgatcaaatatagtttcagacag |
100 |
Q |
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| T |
25569201 |
tggtgatgaaaatgaatctagctcttcagaagtggaacacatggacgaaaatattagcactgctaggtgttgtggattgatcaaatatagtttcagacag |
25569300 |
T |
|
| Q |
101 |
tggattgcaaatttcttgtgtagattagtggagtgctgggggtagtcaaattgttggacttgatcttgattctgaagctgtgatcttagtgctttaatgt |
200 |
Q |
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| T |
25569301 |
tggattgcaaatttcttgtgtagattagtggagtgctgggggtagtcaaattgttggacttgatcttgattctgaagctgtgatcttagtgctttaatgt |
25569400 |
T |
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| Q |
201 |
tgctattgaatttgttggtctttatgagtcatgttcgcctacaaaagatgtatttattgatcatatcaattgtaaaatatttcaa-nnnnnnnnattatg |
299 |
Q |
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||| |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25569401 |
tgccattgtatttgttggtctttatgactcatgttagcctacaaaagatgtatttattgatcatatcaattgtaaaatatttcaatttttttttattatg |
25569500 |
T |
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| Q |
300 |
tcaattgaatggaaagagtttgatggatgctctttgaagtacatatacaaaat |
352 |
Q |
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| T |
25569501 |
tcaattgaatggaaagagtttgatggatgctctttgaagtacatatacaaaat |
25569553 |
T |
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