View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_24 (Length: 329)
Name: NF17515_low_24
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 33235778 - 33236085
Alignment:
| Q |
1 |
tgagtggatatgttgaaccaaagaaagtgttgaaagctgctcaatctacaaagaagaaggttgagctttggccttatgttccatacactatggtggctca |
100 |
Q |
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| T |
33235778 |
tgagtggatatgttgaaccaaagaaagtgttgaaagctgctcaatctacaaagaagaaggttgagctttggccttatgttccatacactatggtggctca |
33235877 |
T |
|
| Q |
101 |
tccttatatttcacaagcctatgataagaaagcacctcctaatatggttagaaaggttggtgacacttccaacataaaagagtccacctttgatgatagc |
200 |
Q |
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| T |
33235878 |
tccttatatttcacaagcctatgataagaaagcacctcctaatatggttagaaaggttggcgacacttccaacataaaagagtccacctttgatgatagc |
33235977 |
T |
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| Q |
201 |
tatgttgaaatgttcagtgatgaaaatccaaatgcttgttctattatgtaatcattcattaaaaaatatgtgtgtatgatgattaatttctcacccctta |
300 |
Q |
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| T |
33235978 |
tatgttgaaatgttcagtgatgaaaatccaaatgcttgttctattatgtaatcattcatt-aaaaatatgtgtgtatgatgattaatttctcacccctta |
33236076 |
T |
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| Q |
301 |
tggtaatca |
309 |
Q |
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| T |
33236077 |
tggtaatca |
33236085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 40577034 - 40576991
Alignment:
| Q |
208 |
aaatgttcagtgatgaaaatccaaatgcttgttctattatgtaa |
251 |
Q |
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| T |
40577034 |
aaattttcagtgatgaaaatccaaatgcttgttctatcatgtaa |
40576991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 38127463 - 38127423
Alignment:
| Q |
210 |
atgttcagtgatgaaaatccaaatgcttgttctattatgta |
250 |
Q |
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| T |
38127463 |
atgttcagtgatgaaaacccaaatgcatgttctatcatgta |
38127423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 10652856 - 10652926
Alignment:
| Q |
67 |
tttggccttatgttccatacactatggtggctcatccttatatttcacaagcctatgataagaaagcacct |
137 |
Q |
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| T |
10652856 |
tttggccatatattccatacaacttggtggcttatccttatatatctcaagcttatgacaagaaagcacct |
10652926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 9699733 - 9699770
Alignment:
| Q |
213 |
ttcagtgatgaaaatccaaatgcttgttctattatgta |
250 |
Q |
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| T |
9699733 |
ttcagtgatgagaatccaaatgcttgttctgttatgta |
9699770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 40787097 - 40787056
Alignment:
| Q |
208 |
aaatgttcagtgatgaaaatccaaatgcttgttctattatgt |
249 |
Q |
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||||||| |||||||||||||| |||||||||||| |||||| |
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| T |
40787097 |
aaatgtttagtgatgaaaatcctaatgcttgttctgttatgt |
40787056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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