View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17515_low_26 (Length: 303)

Name: NF17515_low_26
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17515_low_26
NF17515_low_26
[»] chr1 (7 HSPs)
chr1 (20-258)||(9167547-9167785)
chr1 (1-190)||(20406731-20406920)
chr1 (35-140)||(23601493-23601598)
chr1 (121-229)||(22613902-22614011)
chr1 (22-63)||(30822094-30822135)
chr1 (152-256)||(16674290-16674394)
chr1 (122-168)||(21417335-21417381)
[»] chr3 (9 HSPs)
chr3 (20-174)||(17218221-17218375)
chr3 (151-288)||(12793881-12794018)
chr3 (21-284)||(15855891-15856154)
chr3 (150-286)||(10933060-10933194)
chr3 (106-168)||(12774834-12774896)
chr3 (198-275)||(16279991-16280066)
chr3 (105-203)||(11833942-11834038)
chr3 (22-65)||(8898146-8898189)
chr3 (22-65)||(15046531-15046574)
[»] scaffold2073 (1 HSPs)
scaffold2073 (20-229)||(409-618)
[»] chr8 (10 HSPs)
chr8 (99-285)||(21675947-21676133)
chr8 (21-79)||(24969419-24969477)
chr8 (105-286)||(25280681-25280861)
chr8 (1-105)||(21684471-21684573)
chr8 (1-105)||(21688820-21688922)
chr8 (106-208)||(24382917-24383017)
chr8 (1-66)||(20500438-20500503)
chr8 (22-65)||(17126227-17126270)
chr8 (163-284)||(23638722-23638844)
chr8 (148-176)||(16228285-16228313)
[»] chr5 (4 HSPs)
chr5 (4-208)||(22447321-22447523)
chr5 (22-284)||(17362742-17363000)
chr5 (21-79)||(10178180-10178238)
chr5 (22-62)||(22950540-22950580)
[»] chr2 (9 HSPs)
chr2 (105-288)||(18928752-18928935)
chr2 (1-92)||(18928919-18929010)
chr2 (67-284)||(24280122-24280337)
chr2 (65-168)||(24301590-24301692)
chr2 (150-229)||(28773228-28773307)
chr2 (21-78)||(17739771-17739828)
chr2 (196-284)||(17739607-17739695)
chr2 (22-180)||(27402317-27402483)
chr2 (22-59)||(34898120-34898157)
[»] chr4 (9 HSPs)
chr4 (1-152)||(16570014-16570164)
chr4 (21-284)||(9220387-9220644)
chr4 (21-82)||(9269168-9269229)
chr4 (45-82)||(9251136-9251173)
chr4 (21-82)||(9251381-9251442)
chr4 (116-168)||(21961894-21961946)
chr4 (76-190)||(16569949-16570060)
chr4 (199-283)||(9197624-9197708)
chr4 (200-284)||(9250977-9251061)
[»] scaffold0417 (1 HSPs)
scaffold0417 (29-163)||(2291-2424)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-82)||(31540-31621)
[»] scaffold0135 (1 HSPs)
scaffold0135 (21-284)||(31038-31295)
[»] chr6 (7 HSPs)
chr6 (196-288)||(19981039-19981131)
chr6 (22-111)||(14797092-14797182)
chr6 (150-208)||(17821419-17821477)
chr6 (21-82)||(12485148-12485209)
chr6 (196-288)||(9520241-9520333)
chr6 (22-62)||(17821298-17821338)
chr6 (22-65)||(17913158-17913201)
[»] scaffold0126 (1 HSPs)
scaffold0126 (196-288)||(17404-17496)
[»] chr7 (5 HSPs)
chr7 (23-82)||(17162514-17162573)
chr7 (74-132)||(15010460-15010518)
chr7 (22-68)||(20147372-20147418)
chr7 (105-158)||(15010462-15010515)
chr7 (28-65)||(26008405-26008442)
[»] scaffold1826 (1 HSPs)
scaffold1826 (21-82)||(1192-1253)
[»] scaffold0959 (1 HSPs)
scaffold0959 (21-82)||(523-584)
[»] scaffold0053 (2 HSPs)
scaffold0053 (22-65)||(76253-76296)
scaffold0053 (150-243)||(76387-76480)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 9167547 - 9167785
Alignment:
Q  20 tttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtg 119  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| || ||||    
T  9167547 tttgaacgtttgcattattgaatcatatgttcatgcattcataagtaggatattaatatccaaggacggggattaggatactatgtatccaatgaaggtg 9167646  T
Q  120 attagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgt 219  Q
    ||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||  || |||||||||| |  |||||||||||||||  || ||||    
T  9167647 atttgaatactttgtattcaacgaaggtgattataatacaattgtatcttgaggtgacaaccttgacggtgatcggtaccacatgcatacagagttgtgt 9167746  T
Q  220 ttagacgcataacgtacatttgataattggttaaatgag 258  Q
     ||| |||||| | |||| ||||||||||  ||||||||    
T  9167747 ctaggcgcatagcatacaattgataattgactaaatgag 9167785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 20406920 - 20406731
Alignment:
Q  1 ttatgtcggtgaggtgttctttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatac 100  Q
    |||||| ||||||||||| |||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||   |||||    
T  20406920 ttatgttggtgaggtgttgtttgcacgtatgcattattgagtcatatgttcaagtattcataagtaggatatttatttccaaggacggtgattcagatac 20406821  T
Q  101 tatgtatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtg 190  Q
    |||||||||| |||| |||||||||||||||| |||||||| | ||||||||||||| | |||||||||||||||| ||| |||||||||    
T  20406820 tatgtatccagcgacagtgattagaatactttatattcaaccacggtgattatgatatacttgtatcttgaggtgacgaccttgacggtg 20406731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 23601598 - 23601493
Alignment:
Q  35 tattgagttatatgttcatgcattcataagtaggata-tttatatccaaggacggtgataaggatactatgtatccaacgacggtgattagaatactttc 133  Q
    |||| ||| |||||||||||||||||||||||||||| ||| |||| || || |||||| |||||| | | |||||||||||| ||||||||||| |||     
T  23601598 tattcagtcatatgttcatgcattcataagtaggatattttgtatctaacgaaggtgattaggata-tttatatccaacgacgatgattagaataatttg 23601500  T
Q  134 tattcaa 140  Q
    |||||||    
T  23601499 tattcaa 23601493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 22614011 - 22613902
Alignment:
Q  121 ttagaatactttctattcaac-gaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgt 219  Q
    |||||||||||| |||||||  || | || |||||||||| |||||||||||||||||||| |||||| ||||| |||||||||| ||| |  |||||||    
T  22614011 ttagaatactttgtattcaagagacgatgtttatgatacatttgtatcttgaggtgatgaccttgacgatgaccgataccacatgaatatagagtcgtgt 22613912  T
Q  220 ttagacgcat 229  Q
     ||| |||||    
T  22613911 ctaggcgcat 22613902  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 30822135 - 30822094
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataa 63  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  30822135 tgaacgtatgcattattgagtcatatgttcatgcattcataa 30822094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 16674394 - 16674290
Alignment:
Q  152 atgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggtt 251  Q
    ||||||||| |||||||||||| |||||| |||  | |||    ||||||||||||| |  ||||||| ||| ||||| || ||||||||||||||| ||    
T  16674394 atgatacagatgtatcttgaggcgatgaccttggtgatgaatggtaccacatgcatatagagtcgtgtctaggcgcattacatacatttgataattgttt 16674295  T
Q  252 aaatg 256  Q
    |||||    
T  16674294 aaatg 16674290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 21417381 - 21417335
Alignment:
Q  122 tagaatactttctattcaacgaaggtgattatgatacagttgtatct 168  Q
    ||||||| ||| |||||||||| |||| |||||||||||||||||||    
T  21417381 tagaatattttgtattcaacgacggtgtttatgatacagttgtatct 21417335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 17218375 - 17218221
Alignment:
Q  20 tttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtg 119  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||    
T  17218375 tttgaacgtatgcattattgagtcatatattcatgaattcataagtaggatattcatatccaacgacggtgattaggatactatatatccaacgacggtg 17218276  T
Q  120 attagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggt 174  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  17218275 attagaatactttgtattcaacgacggtgattatgatacggttgtatcttgaggt 17218221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 12794018 - 12793881
Alignment:
Q  151 tatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggt 250  Q
    ||||||||| |||||||||||||||| ||| ||||    ||||| ||||||||||||| |  ||||||| |||||||||||| ||||||||||||||| |    
T  12794018 tatgatacatttgtatcttgaggtgacgaccttgataacgaccagtaccacatgcatatagagtcgtgtctagacgcataacatacatttgataattgat 12793919  T
Q  251 taaatgagtcatgtttgcttatgtgattggtgaatact 288  Q
    |||||| || ||||||||||||||| ||| ||||||||    
T  12793918 taaatgtgttatgtttgcttatgtgcttgatgaatact 12793881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 15856154 - 15855891
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtga 120  Q
    ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |  ||  |||||| | | ||| |||| | |  ||    
T  15856154 ttgaatgtatgcattgttgagttatatgttcatgcattcgtaagtaggatatttatatccaatgaagacgactaggata-tttatattcaacaaagacga 15856056  T
Q  121 ttagaatactttctattc-aacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgt 219  Q
     ||||||| ||| ||||| || || |  || ||||||||| |||||||||||||||| ||| |||| |  ||||| ||||||||||||| |  |||||||    
T  15856055 ctagaataatttgtattcaaatgacgacgactatgatacatttgtatcttgaggtgacgaccttgatgacgaccagtaccacatgcatatagagtcgtgt 15855956  T
Q  220 ttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaa 284  Q
     |||  |||| || ||||||||| ||||| ||||||| ||  | |||| ||||||| ||||||||    
T  15855955 ctaggtgcattacatacatttgaaaattgattaaatgtgttgtatttgattatgtgcttggtgaa 15855891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 286
Target Start/End: Complemental strand, 10933194 - 10933060
Alignment:
Q  150 ttatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtttagacgcataacgtacatttgataattgg 249  Q
    |||||||||| ||||||||  |||||| ||| |||| ||| | | |||||||||||||| || |||||   ||| |||||||| |||||||||| ||||     
T  10933194 ttatgatacatttgtatcta-aggtgacgaccttga-ggtaatcgataccacatgcatatatagtcgttactaggcgcataacatacatttgatgattga 10933097  T
Q  250 ttaaatgagtcatgtttgcttatgtgattggtgaata 286  Q
    ||||||| ||||||||| |||||||| ||| ||||||    
T  10933096 ttaaatgtgtcatgtttacttatgtgcttgatgaata 10933060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 12774834 - 12774896
Alignment:
Q  106 atccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatct 168  Q
    |||||| || ||||||||||||||||| |||||||||| |||| |||||||||| ||||||||    
T  12774834 atccaatgaaggtgattagaatactttgtattcaacgacggtgtttatgatacaattgtatct 12774896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 16280066 - 16279991
Alignment:
Q  198 ccacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtg 275  Q
    ||||||||||| |  ||||||| ||| ||||  || ||||||||||||||||||||||| ||||||||||||||||||    
T  16280066 ccacatgcatatagagtcgtgtctaggcgca--acatacatttgataattggttaaatgtgtcatgtttgcttatgtg 16279991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 11833942 - 11834038
Alignment:
Q  105 tatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacat 203  Q
    |||| ||||| ||||||||||||||||| |||||||||| |||| | |||||||| || |||| | |||||| ||| |||| |||||||| ||||||||    
T  11833942 tatctaacgaaggtgattagaatactttgtattcaacgacggtgttgatgatacatttatatc-taaggtgaagaccttga-ggtgaccagtaccacat 11834038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 8898189 - 8898146
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataagt 65  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||    
T  8898189 tgaatgtatgcattgttgagtcatatgttcatgcattcataagt 8898146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 15046531 - 15046574
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataagt 65  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||    
T  15046531 tgaacatatgcattgttgagtcatatgttcatgcattcataagt 15046574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2073 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold2073
Description:

Target: scaffold2073; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 618 - 409
Alignment:
Q  20 tttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtg 119  Q
    ||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||  ||    
T  618 tttgatcgtaagcattatagagtcatatgttcatgcattcataagtaggatatttctatccaaggacggtgattaggatactatttatacaacgacaatg 519  T
Q  120 attagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgt 219  Q
    ||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||| ||||  |||||   ||||||||||||| |  |||||||    
T  518 attagaatactttgtattcaacgaaggtgatgatgatatagttgtatcttgaggtgacgaccttgatcgtgactggtaccacatgcatatagagtcgtgt 419  T
Q  220 ttagacgcat 229  Q
     ||| |||||    
T  418 ctaggcgcat 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 99 - 285
Target Start/End: Complemental strand, 21676133 - 21675947
Alignment:
Q  99 actatgtatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaatac 198  Q
    |||||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||| |||||||||    ||||    
T  21676133 actatgtatccaacgacggtgattagaatactttgtattcaacaacggtgtttatgatacagttgtatcttgaggtgatgaccttgacggtgtttgatac 21676034  T
Q  199 cacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaat 285  Q
    |||||||||| || ||||||| ||  | |||||| ||||||||||||||||||||||| |||||  ||||||||||| |||||||||    
T  21676033 cacatgcatatatggtcgtgtctacgctcataacatacatttgataattggttaaatgtgtcatacttgcttatgtgtttggtgaat 21675947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 24969477 - 24969419
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatc 79  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24969477 ttgaacgtatgcattattgagtcatatgttcatgcattcataagtaggatatttatatc 24969419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 286
Target Start/End: Complemental strand, 25280861 - 25280681
Alignment:
Q  105 tatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatg 204  Q
    ||||||| || ||||||||||||| ||| ||||||| || |||| |||||||||| ||||||| | ||| || ||| |||| ||||||| ||||||||||    
T  25280861 tatccaatgaaggtgattagaatattttgtattcaatgatggtgtttatgatacatttgtatc-taaggcgacgaccttga-ggtgaccgataccacatg 25280764  T
Q  205 catacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatg-tttgcttatgtgattggtgaata 286  Q
    |||| |  ||||||| |||  || |||  |||||||||| |||||| ||||| |||||| |||||||||||| ||| ||||||    
T  25280763 catatagagtcgtgtctaggagcgtaatatacatttgattattggtgaaatgtgtcatgttttgcttatgtgcttgatgaata 25280681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 21684573 - 21684471
Alignment:
Q  1 ttatgtcggtgaggtgttctttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatac 100  Q
    |||||| |||||  |||| ||||| |||||||||| |  ||| ||||||| ||||||||||||||||||||||||||| |||||| |||||| | |||||    
T  21684573 ttatgttggtgatttgttatttgagcgtatgcattgta-agtaatatgtttatgcattcataagtaggatatttatat-caaggatggtgattaagatac 21684476  T
Q  101 tatgt 105  Q
    |||||    
T  21684475 tatgt 21684471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 21688922 - 21688820
Alignment:
Q  1 ttatgtcggtgaggtgttctttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatac 100  Q
    |||||| |||||  |||| ||||| |||||||||| |  ||| ||||||| ||||||||||||||||||||||||||| |||||| |||||| | |||||    
T  21688922 ttatgttggtgatttgttatttgagcgtatgcattgta-agtaatatgtttatgcattcataagtaggatatttatat-caaggatggtgattaagatac 21688825  T
Q  101 tatgt 105  Q
    |||||    
T  21688824 tatgt 21688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 24383017 - 24382917
Alignment:
Q  106 atccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgc 205  Q
    |||||| || ||||||||||||||||| |||||||||| |||| |||||||||| ||| ||| | || ||| ||| |||| |||||||| ||||||||||    
T  24383017 atccaatgaaggtgattagaatactttgtattcaacgatggtgtttatgatacatttgcatc-taagctgacgaccttga-ggtgaccagtaccacatgc 24382920  T
Q  206 ata 208  Q
    |||    
T  24382919 ata 24382917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20500438 - 20500503
Alignment:
Q  1 ttatgtcggtgaggtgttctttgaacgtatgcattattgagttatatgttcatgcattcataagta 66  Q
    |||||| |||||| |||| | ||||||||||||| |||| || |||||||||||||||| ||||||    
T  20500438 ttatgttggtgagttgttgtatgaacgtatgcataattgtgtcatatgttcatgcattcgtaagta 20500503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 17126270 - 17126227
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataagt 65  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||    
T  17126270 tgaacatatgcattattgagtcatatgttcatgccttcataagt 17126227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 284
Target Start/End: Complemental strand, 23638844 - 23638722
Alignment:
Q  163 gtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtttagacgcataacgtacatttgataat-tggttaaatgagtca 261  Q
    ||||||| |||||| ||| |||||| ||||||||||| |||||||| |  ||||| | |||  |||| || |||||||| | || | |||||||| ||||    
T  23638844 gtatcttaaggtgacgaccttgacgatgaccaataccgcatgcatatagagtcgtatctaggtgcattacatacatttggtgatgttgttaaatgcgtca 23638745  T
Q  262 tgtttgcttatgtgattggtgaa 284  Q
    | |||| ||||||| ||||||||    
T  23638744 tatttgattatgtgcttggtgaa 23638722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 16228313 - 16228285
Alignment:
Q  148 gattatgatacagttgtatcttgaggtga 176  Q
    |||||||||||||||||||||||||||||    
T  16228313 gattatgatacagttgtatcttgaggtga 16228285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 22447523 - 22447321
Alignment:
Q  4 tgtcggtgaggtgttctttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactat 103  Q
    ||||||||| ||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||| |||||| | |    
T  22447523 tgtcggtgatgtgttatttgaacgtatgccttattgagtcatatgttcatgtattcataagtaggat-tttatatccaacgacggtgattaggatatt-t 22447426  T
Q  104 gtatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacat 203  Q
     |||||||| | ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| ||| ||| ||||||||||    ||||||||    
T  22447425 atatccaacaaaggtgattagaatactttgtattcaacgatggtgattatgatacagatgtatcttgagatgacgaccttgacggtgattggtaccacat 22447326  T
Q  204 gcata 208  Q
    |||||    
T  22447325 gcata 22447321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 22 - 284
Target Start/End: Complemental strand, 17363000 - 17362742
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtgat 121  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||| ||||||||||||||  || | |||  || ||  | |  ||||||||||| |||     
T  17363000 tgaacgtatgcattattgagccatatgttcatgcattgataagtaagatatttatatccagtgaagatgactagaatgtt-tacatccaacgacgatgac 17362902  T
Q  122 tagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgttt 221  Q
    ||||||||||| |||| |||||   ||||||||||||| |||||||||||||||| ||| |||||  |||||  ||||||||||||| |  ||||||| |    
T  17362901 tagaatactttgtatt-aacgaca-tgattatgatacatttgtatcttgaggtgacgaccttgacaatgaccggtaccacatgcatatagagtcgtgtct 17362804  T
Q  222 agacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaa 284  Q
    || |||||  | |||||||||||||| ||||| || |||||  ||| ||||||| ||||||||    
T  17362803 aggcgcattgcatacatttgataattagttaagtgtgtcat-attgattatgtgcttggtgaa 17362742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 10178180 - 10178238
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatc 79  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  10178180 ttgaacgtatgcattgttgagtcatatgttcatgcattcataagtaggatatttatatc 10178238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 22950580 - 22950540
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcata 62  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  22950580 tgaacgtatgcattgttgagtcatatgttcatgcattcata 22950540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 288
Target Start/End: Complemental strand, 18928935 - 18928752
Alignment:
Q  105 tatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatg 204  Q
    |||||||||||| |||||| |||||||| |||| || ||||||| ||||||||||||||||||||||||||| ||| |||  | ||| |  |||||||||    
T  18928935 tatccaacgacgatgattataatactttgtatttaatgaaggtgtttatgatacagttgtatcttgaggtgacgaccttggtgatgaacggtaccacatg 18928836  T
Q  205 catacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaatact 288  Q
    |||| |   |||||||||| |||||| | ||||||||||||||||||||||| |||||  |||||| |||| ||||||||||||    
T  18928835 catatagaatcgtgtttaggcgcatatcatacatttgataattggttaaatgtgtcatacttgcttgtgtgcttggtgaatact 18928752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 18929010 - 18928919
Alignment:
Q  1 ttatgtcggtgaggtgttctttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgat 92  Q
    |||||| |||||  |||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |||| ||||    
T  18929010 ttatgttggtgatttgttgtttgaacgtatgcattattgagtcatatgtttatgcattcataagtagaatatttatatccaacgacgatgat 18928919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 284
Target Start/End: Complemental strand, 24280337 - 24280122
Alignment:
Q  67 ggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtgatt-agaatactttctattcaacgaaggtgattatgatacagttgta 165  Q
    |||| ||||||||||| || |||||| |||||| | | |||||||||| ||||||| |||||||||| |||||||||| |||| |||||||||| |||||    
T  24280337 ggatgtttatatccaatgaaggtgattaggatatt-tatatccaacgaaggtgatttagaatactttgtattcaacgacggtgtttatgatacatttgta 24280239  T
Q  166 tcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtttagacgcataacgtacatttgataat-tggttaaatgagtcatgt 264  Q
    || || ||||||||| | || |||||||| ||||||||||||| |  | ||||| ||||||||| || |||||||| | || | |||||||| ||||| |    
T  24280238 tc-tggggtgatgacctcga-ggtgaccagtaccacatgcatatagag-cgtgtctagacgcattacatacatttggtgatgttgttaaatgcgtcatat 24280142  T
Q  265 ttgcttatgtgattggtgaa 284  Q
    ||| ||| ||| ||||||||    
T  24280141 ttgattacgtgcttggtgaa 24280122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 24301692 - 24301590
Alignment:
Q  65 taggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgt 164  Q
    |||||||||||||||| | || |||||| |||||| | | |||||||||| ||||||||||||||||| ||||||||||  ||| |||||||||| ||||    
T  24301692 taggatatttatatccgatgaaggtgattaggatatt-tatatccaacgaaggtgattagaatactttgtattcaacgacagtgtttatgatacatttgt 24301594  T
Q  165 atct 168  Q
    ||||    
T  24301593 atct 24301590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 28773307 - 28773228
Alignment:
Q  150 ttatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtttagacgcat 229  Q
    |||||||||| |||||||||||||||||||| |||||| ||||| |||||| ||||||| |  ||||||| ||| |||||    
T  28773307 ttatgatacaattgtatcttgaggtgatgaccttgacgatgaccgataccaaatgcatatagagtcgtgtctaggcgcat 28773228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 17739828 - 17739771
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatat 78  Q
    |||||||||||| || |||||| ||||||||||||||| |||||||  ||||||||||    
T  17739828 ttgaacgtatgcgttgttgagtcatatgttcatgcattaataagtaaaatatttatat 17739771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 17739695 - 17739607
Alignment:
Q  196 taccacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaa 284  Q
    ||||||||||||| |  ||||||| ||| |||||  | |||||||||||||| |||||||| ||||| |||| ||||||| ||| ||||    
T  17739695 taccacatgcatatagagtcgtgtctaggcgcatttcatacatttgataattagttaaatgtgtcatatttgattatgtgtttgatgaa 17739607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 27402483 - 27402317
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataagt-------aggatatttatatccaaggacggtgataaggatactatgtatccaacga 114  Q
    |||| |||||||||||||| | |||||||||||||||  |||||       ||||||||||||||||| || |  ||| |||||||| ||||||||  |     
T  27402483 tgaatgtatgcattattgaatcatatgttcatgcattagtaagtgtcaagtaggatatttatatccaatgaagacgattaggatactttgtatccagagg 27402384  T
Q  115 cggtgattagaatactttctattcaac-gaaggtgattatgatacagttgtatcttgaggtgatgac 180  Q
    ||  || ||||||||||| |||||||  || |  ||||||||||||||||||||  |||| ||||||    
T  27402383 cgacgactagaatactttgtattcaaatgacgacgattatgatacagttgtatcaagaggcgatgac 27402317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 34898120 - 34898157
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattc 59  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  34898120 tgaacgtatgcattgttgagtcatatgttcatgcattc 34898157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 16570164 - 16570014
Alignment:
Q  1 ttatgtcggtgaggtgttctttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatac 100  Q
    |||||| ||||||||||| ||||||| ||||  |||||| || |||||||||| ||||||||||||||||||||||||| |||||  ||||| |||||||    
T  16570164 ttatgttggtgaggtgttgtttgaacatatgtgttattgggtcatatgttcatacattcataagtaggatatttatatctaaggaaagtgattaggatac 16570065  T
Q  101 tatgtatccaacgacggtgattagaatactttctattcaacgaaggtgatta 152  Q
     ||||||||||||||||||| ||| ||| ||| ||| |||||| ||||||||    
T  16570064 catgtatccaacgacggtgaataggata-tttatatccaacgacggtgatta 16570014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 9220644 - 9220387
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtga 120  Q
    ||||| ||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||| || |  |   | |||| |||  ||||||||| |  ||    
T  9220644 ttgaatgtatgcattgttgagtcgtatgttcatgcattcataagtatgatatttatatccaatgaagacggctatgatattat--atccaacgaagacga 9220547  T
Q  121 ttagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtt 220  Q
     | |||||| ||| | |    || | ||| ||||||||| |||||| ||||||||| ||| |||| | |||||| || |||||||||| |  ||||||||    
T  9220546 cttgaatacgttcaaat----gatgatgactatgatacatttgtattttgaggtgacgaccttgatgatgaccagtagcacatgcatatagagtcgtgtt 9220451  T
Q  221 tagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaa 284  Q
    ||| ||||| || ||||| ||||||||| ||||||| ||| | |||| ||||||| ||||||||    
T  9220450 taggcgcattacatacatatgataattgattaaatgtgtcgtatttgtttatgtgcttggtgaa 9220387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 9269229 - 9269168
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaa 82  Q
    |||| |||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||    
T  9269229 ttgagcgtatgcattgtggagtcgtatgttcatgcattcataagtaggatatttatatccaa 9269168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 9251173 - 9251136
Alignment:
Q  45 tatgttcatgcattcataagtaggatatttatatccaa 82  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9251173 tatgttcatgcattcataagtaggatatttatatccaa 9251136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 9251442 - 9251381
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaa 82  Q
    |||| |||||||||| ||||||  ||| |||||||||||||||||| |||||||||||||||    
T  9251442 ttgagcgtatgcattgttgagtcgtatattcatgcattcataagtaagatatttatatccaa 9251381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 21961946 - 21961894
Alignment:
Q  116 ggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatct 168  Q
    ||||||||||||||||| |||||||||| |||| |||||||||| ||||||||    
T  21961946 ggtgattagaatactttgtattcaacgacggtgtttatgatacatttgtatct 21961894  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 16570060 - 16569949
Alignment:
Q  76 tatccaaggacggtgataaggatactatgtatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtg 175  Q
    ||||||| ||||||||  |||||| | | |||||||||||||||||||||||||||| ||||||| ||   || |||||||||| |||| || |||||||    
T  16570060 tatccaacgacggtgaataggatatt-tatatccaacgacggtgattagaatactttgtattcaatgacaatgtttatgatacaattgt-tc-tgaggtg 16569964  T
Q  176 atgacattgacggtg 190  Q
    | ||| |||||||||    
T  16569963 acgaccttgacggtg 16569949  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 9197708 - 9197624
Alignment:
Q  199 cacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtga 283  Q
    |||||||||| |  ||||| ||||| ||||| || ||||||||||||||| ||||||| ||| | |||| ||||||| |||||||    
T  9197708 cacatgcatatagagtcgtttttaggcgcattacatacatttgataattgattaaatgtgtcttatttgtttatgtgcttggtga 9197624  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 9251061 - 9250977
Alignment:
Q  200 acatgcatacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaa 284  Q
    ||||||||| |  ||||||||||  ||||| || ||||||||||||||| ||||||| ||| | |||| ||||||| ||||||||    
T  9251061 acatgcatataaagtcgtgtttatgcgcattacatacatttgataattgattaaatgtgtcgtatttgtttatgtgcttggtgaa 9250977  T

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Target: scaffold0417 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 2424 - 2291
Alignment:
Q  29 atgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtgattagaata 128  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||  | | |||  |||||||| |||||||||||||| ||| |||||||    
T  2424 atgcattattgagtcatatgttcatgtattcataagtaggatatttatatccaactatgatgactaggatact-tgtatccaacgacgatgactagaata 2326  T
Q  129 ctttctattcaacgaaggtgattatgatacagttg 163  Q
    || | |||||||||| | |||||||||||||||||    
T  2325 ctatgtattcaacgacgatgattatgatacagttg 2291  T

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Target: scaffold0111 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31540 - 31621
Alignment:
Q  1 ttatgtcggtgaggtgttctttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaa 82  Q
    |||||| |||||  |||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31540 ttatgttggtgatttgttgtatgaacgtatgcattattgagtcatatgttcatgcattcataagtaggatatttatatccaa 31621  T

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Target: scaffold0135 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 31295 - 31038
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaaggacggtgataaggatactatgtatccaacgacggtga 120  Q
    ||||| ||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||| || |  |   | |||| |||  ||||||||| |  ||    
T  31295 ttgaatgtatgcattgttgagtcgtatgttcatgcattcataagtatgatatttatatccaatgaagacggctatgatattat--atccaacgaagacga 31198  T
Q  121 ttagaatactttctattcaacgaaggtgattatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtt 220  Q
     | |||||| ||| | |    || | ||| ||||||||| |||||| ||||||||| ||| |||| | |||||| || |||||||||| |  ||||||||    
T  31197 cttgaatacgttcaaat----gatgatgactatgatacatttgtattttgaggtgacgaccttgatgatgaccagtagcacatgcatatagagtcgtgtt 31102  T
Q  221 tagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaa 284  Q
    ||| ||||| || ||||| ||||||||| ||||||| ||| | |||| ||||||| ||||||||    
T  31101 taggcgcattacatacatatgataattgattaaatgtgtcgtatttgtttatgtgcttggtgaa 31038  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 19981039 - 19981131
Alignment:
Q  196 taccacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaatact 288  Q
    ||||||||||| | |  ||||||| || ||||||||| ||||||||||||||||| ||||  ||||||||||||||||| |||||||||||||    
T  19981039 taccacatgcaaatagagtcgtgtgtaaacgcataacatacatttgataattggtgaaatatgtcatgtttgcttatgttattggtgaatact 19981131  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 14797182 - 14797092
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcat-aagtaggatatttatatccaaggacggtgataaggatactatgtatccaa 111  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||  || | |||| |||||||| |||||||||    
T  14797182 tgaacgtatgcattattgagtcatatgttcatgcattcataaagtatgatatttatattcagtgatgatgattaggatactttgtatccaa 14797092  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 17821419 - 17821477
Alignment:
Q  150 ttatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcata 208  Q
    |||||||||| |||||||||||||||||||| |||||| |||||  |||||||||||||    
T  17821419 ttatgatacaattgtatcttgaggtgatgaccttgacgatgacctgtaccacatgcata 17821477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 12485209 - 12485148
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaa 82  Q
    ||||| ||||| ||| |||||| ||| ||||||||||||||||||| |||||||||||||||    
T  12485209 ttgaatgtatgtattgttgagtcataggttcatgcattcataagtatgatatttatatccaa 12485148  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 9520333 - 9520241
Alignment:
Q  196 taccacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaatact 288  Q
    ||||||||||||| |  ||| ||| ||  ||||| || ||||||||||||||||||| ||| |||||  ||||||||||| ||||||||||||    
T  9520333 taccacatgcatatagagtcatgtctaagcgcatgacatacatttgataattggttatatgtgtcatacttgcttatgtgcttggtgaatact 9520241  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 17821298 - 17821338
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcata 62  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  17821298 tgaacgtatgcattgttgagtcatatgttcatgcattcata 17821338  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 17913201 - 17913158
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataagt 65  Q
    |||||||||||||| | |||| ||||||||||||||||||||||    
T  17913201 tgaacgtatgcattgtcgagtcatatgttcatgcattcataagt 17913158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 17404 - 17496
Alignment:
Q  196 taccacatgcatacattgtcgtgtttagacgcataacgtacatttgataattggttaaatgagtcatgtttgcttatgtgattggtgaatact 288  Q
    ||||||||||||| |  ||||||| |||||||| ||| |||||||||| ||||||| |||| |||||||||||||||||| |  |||||||||    
T  17404 taccacatgcatatagagtcgtgtctagacgcacaacatacatttgatgattggttgaatgtgtcatgtttgcttatgtgctcagtgaatact 17496  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 17162514 - 17162573
Alignment:
Q  23 gaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaa 82  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  17162514 gaacttatgcattattgagtcatatgctcatgcattcataagtagaatatttatatccaa 17162573  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 15010460 - 15010518
Alignment:
Q  74 tatatccaaggacggtgataaggatactatgtatccaacgacggtgattagaatacttt 132  Q
    ||||||||| | ||||||| |||||||| |||||||||||||||||||||  |||||||    
T  15010460 tatatccaacgtcggtgattaggatactttgtatccaacgacggtgattatgatacttt 15010518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 20147418 - 20147372
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataagtagg 68  Q
    ||||||||| |||||||||||  ||||||||||||||||||||||||    
T  20147418 tgaacgtatacattattgagtcttatgttcatgcattcataagtagg 20147372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 15010462 - 15010515
Alignment:
Q  105 tatccaacgacggtgattagaatactttctattcaacgaaggtgattatgatac 158  Q
    ||||||||| |||||||||| ||||||| ||| |||||| ||||||||||||||    
T  15010462 tatccaacgtcggtgattaggatactttgtatccaacgacggtgattatgatac 15010515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 26008405 - 26008442
Alignment:
Q  28 tatgcattattgagttatatgttcatgcattcataagt 65  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  26008405 tatgcattagtgagtcatatgttcatgcattcataagt 26008442  T

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Target: scaffold1826 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 1253 - 1192
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaa 82  Q
    |||| |||||||||| |||||| ||||||||||  |||||||||||||||||||| ||||||    
T  1253 ttgagcgtatgcattgttgagtcatatgttcatatattcataagtaggatatttacatccaa 1192  T

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Target: scaffold0959 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 584 - 523
Alignment:
Q  21 ttgaacgtatgcattattgagttatatgttcatgcattcataagtaggatatttatatccaa 82  Q
    |||||| |||||||| ||||||  ||| |||||||||||||||||| |||||||||||||||    
T  584 ttgaacttatgcattgttgagtcttatattcatgcattcataagtatgatatttatatccaa 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 76253 - 76296
Alignment:
Q  22 tgaacgtatgcattattgagttatatgttcatgcattcataagt 65  Q
    |||||||||||||| |||| | ||||||||||||||||||||||    
T  76253 tgaacgtatgcattgttgattcatatgttcatgcattcataagt 76296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 76387 - 76480
Alignment:
Q  150 ttatgatacagttgtatcttgaggtgatgacattgacggtgaccaataccacatgcatacattgtcgtgtttagacgcataacgtacatttgat 243  Q
    |||||||||| | |||| ||||||||| |||  ||||| |||| | ||||||||||||| |  ||||||| ||| |||||| | ||||||||||    
T  76387 ttatgatacaatagtattttgaggtgacgaccatgacgatgactagtaccacatgcatatagagtcgtgtctaggcgcatagcatacatttgat 76480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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