View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_27 (Length: 291)
Name: NF17515_low_27
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 50049733 - 50049491
Alignment:
| Q |
1 |
gccacccttcccatatatttttctaatgctcatggagattcacgcaacacagagttgacttcttataatagaaaaacttaaatgttcgttgaaattcata |
100 |
Q |
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| T |
50049733 |
gccacccttcccatatatttttctaatgctcatggagattcacgcaacacagagttgacttcttataatagaaaaacttaaatgttcgttgaaattcata |
50049634 |
T |
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| Q |
101 |
taagaagttgaattattgattaataaaatactaattagagaaagaattattgataattaaataaattagacaaagccttgccgtatgtggtggtatgcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50049633 |
taagaagttgaattattgattaataaaatactaattagagaaagaattattgataattaaataaattagacaaagccttgccgtatg---tggtatgcat |
50049537 |
T |
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| Q |
201 |
atatgtattccacttgtataacaacgtagataacaagaagtgttaa |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50049536 |
atatgtattccacttgtataacaacgtagataacaagaagtgttaa |
50049491 |
T |
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