View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_31 (Length: 270)
Name: NF17515_low_31
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 26641513 - 26641572
Alignment:
| Q |
93 |
tggctgaggttagaactccgaacattgcatatattaattatgcattgtccctgcgttaaa |
152 |
Q |
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| T |
26641513 |
tggctgaggttagaactccaaacattgcatatattaattatgcattgtccctgcgttaaa |
26641572 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 26638208 - 26638257
Alignment:
| Q |
93 |
tggctgaggttagaactccgaacattgcatatattaattatgcattgtcc |
142 |
Q |
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| T |
26638208 |
tggctgaggttagaaccccgaacattgcatatattaattatgcattgtcc |
26638257 |
T |
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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 26641435 - 26641486
Alignment:
| Q |
15 |
cacagaggataacaaatttatcttaagagatttaacactatattccgaaatg |
66 |
Q |
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| T |
26641435 |
cacaaaggataacaaatctatcttaagagatttaacactatattccgaaatg |
26641486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 26638368 - 26638409
Alignment:
| Q |
223 |
tcatttttaagggtaaatgtgtcattttcgtgtatgccaaaa |
264 |
Q |
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| T |
26638368 |
tcatttttaagggtaaatgtgtcattttcgtgtatgccaaaa |
26638409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 26641643 - 26641684
Alignment:
| Q |
223 |
tcatttttaagggtaaatgtgtcattttcgtgtatgccaaaa |
264 |
Q |
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| T |
26641643 |
tcatttttaagggtaaatgtgtcattttcgtgtatgccaaaa |
26641684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 26638135 - 26638185
Alignment:
| Q |
15 |
cacagaggataacaaatttatcttaagagatttaacactatattccgaaat |
65 |
Q |
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| T |
26638135 |
cacaaaggataacaaatctatcttaaaagatttaacactatattcccaaat |
26638185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 26641889 - 26641934
Alignment:
| Q |
15 |
cacagaggataacaaatttatcttaagagatttaacactatattcc |
60 |
Q |
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| T |
26641889 |
cacaaaggataccaattttatcttaagagatttaacactatattcc |
26641934 |
T |
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