View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_4 (Length: 653)
Name: NF17515_low_4
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Complemental strand, 33027064 - 33026466
Alignment:
| Q |
18 |
aaatgttaggagaaagcagttgaaattattatgtttgtatttgtgccactcacatggaattatggttaaagcaagttattcgttcagcaacacaaaaata |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33027064 |
aaatgttaggagaaagcggttgaaattattatgtttgtatttgtgccactcacatggaattatggttaaagcaagttattcgttcagcaacacaaaaaca |
33026965 |
T |
|
| Q |
118 |
aatcaagtcttccctgagatcccttcctcactctagttgggatattaacaaggtcagaagttagnnnnnnnctattctatttctgtcaagattgtctgtg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33026964 |
aatcaagtcttccctgagatcccttcctcactctagttgggatattaacaaggtcagaagttagtttttttctattctatttctgtcaagattgtctgtg |
33026865 |
T |
|
| Q |
218 |
cttgaaatattaatcttagattgcaaaatgtgatactatttcttaaggatgtcaagttaatcacaacatggagtgtttttagtgcagcattttaattttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33026864 |
cttgaaatattaatcttagattgcaaaatgtgatactatttcttaaggatgtcaagttaatcacaacatggagtgtttttagtgcagcattttaattttt |
33026765 |
T |
|
| Q |
318 |
caggcattacattgacaatatataataaaccttgataatgtgtcctttgttttataattaccttgataatatttgtgagttattattatgaagatgagta |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33026764 |
caggcattacattgacaatatataataaaccttgataatgtgttctttgttttataattaccttgataatatttgtgagttattattatgaagatgagta |
33026665 |
T |
|
| Q |
418 |
tatgaccagttggttgttaaattttgggggattcggcttaattnnnnnnntcaaaggaaggttgatatggcattggcaatacaatccatgcatgtatata |
517 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33026664 |
tatgaccagttggttgttaaattttgggggattcggcttaattaagaaaatcaaaggaaggttgatatggcattggcaatacaatccatgcatgtatata |
33026565 |
T |
|
| Q |
518 |
tgtaatactaatcattgatgaaaaattactcgctatacggtccaaacattaaaatgagttgctcactttagaggagtcggatccaattttggttctagt |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33026564 |
tgtaatactaatcattgatgaaaaattactcgctatacggtccaaacattaaaatgagttgctcactttagaggagtcggatccaattttggttctagt |
33026466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 189 - 614
Target Start/End: Complemental strand, 33031216 - 33030812
Alignment:
| Q |
189 |
ctattctatttctgtcaagattgtctgtgcttgaaatattaatcttagattgcaaaatgtgatactatttcttaaggatgtcaagttaatcacaacatgg |
288 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
33031216 |
ctattctatttctgtcaagattgtgtgtgcttgaaatattaatcttagattgcaaaatgtgatactgttttttaaggatgtcaagttaatcacaacatga |
33031117 |
T |
|
| Q |
289 |
agtgtttttagtgcagcattttaatttttcaggcattacattgacaatatataataaaccttgataatgtgtcctttgttttataattaccttgataata |
388 |
Q |
| |
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||||| ||||| | ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||| |
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| T |
33031116 |
agtgtgtttagggaagcattttaatttggcaggtattacattgacaatatataataaaccttgataatgt--cctttattttataatcaccgtgataata |
33031019 |
T |
|
| Q |
389 |
tttgtgagttattattatgaagatgagtatatgaccagttggttgttaaattttgggggattcggcttaattnnnnnnntcaaaggaaggttgatatggc |
488 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
33031018 |
ttcgtgagt-------------------atatgaccagttggttgttaaattttgggggattcggcttaattaagaaaatcatagaaaggttgatatggc |
33030938 |
T |
|
| Q |
489 |
attggcaatacaatccatgcatgtatatatgtaatactaatcattgatgaaaaattactcgctatacggtccaaacattaaaatgagttgctcactttag |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||||||| |
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| T |
33030937 |
attggcaatacaatccatgcatgtatatatgtaatattaatcattgatgaataattactcactttacggtccaaacattaaaatgagttgcttactttag |
33030838 |
T |
|
| Q |
589 |
aggagtcggatccaattttggttcta |
614 |
Q |
| |
|
||||||| |||||||||||||||||| |
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|
| T |
33030837 |
aggagtcagatccaattttggttcta |
33030812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 33031408 - 33031257
Alignment:
| Q |
18 |
aaatgttaggagaaagcagttgaaattattatgtttgtatttgtgccactcacatggaattatggttaaagcaagttattcgttcagcaacacaaaaata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||| | |
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| T |
33031408 |
aaatgttaggagaaagcagttgaaattattatgtttgtatttgtgccactcacatggaattatggttaaagcaagttattcattcagaatcataaaaaca |
33031309 |
T |
|
| Q |
118 |
aatcaagtcttccctgagatcccttcctcactctagttgggatattaacaag |
169 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
33031308 |
aatctagtcttccttgagatcccttcctcactctagttgggaaataaacaag |
33031257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 33041756 - 33041695
Alignment:
| Q |
397 |
ttattattatgaagatgagtatatgaccagttggttgttaaattttgggggattcggcttaa |
458 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| ||| ||| ||||||| |
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| T |
33041756 |
ttattattatgaagatgagtatatgaccaaatggtagttaaattttagggcatttggcttaa |
33041695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 458
Target Start/End: Complemental strand, 33016195 - 33016140
Alignment:
| Q |
403 |
ttatgaagatgagtatatgaccagttggttgttaaattttgggggattcggcttaa |
458 |
Q |
| |
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|||| |||||||||||||||||| |||| |||||||||||||||||| ||||||| |
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|
| T |
33016195 |
ttataaagatgagtatatgaccaaatggtagttaaattttgggggatttggcttaa |
33016140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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