View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_44 (Length: 221)
Name: NF17515_low_44
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 6232429 - 6232241
Alignment:
| Q |
16 |
aatatacaaggagtaaactaagtataaaataaataaccttttttgcttcatgtaactgcaagccaccaaagtgcaatgaataccataattgagctgtaaa |
115 |
Q |
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| T |
6232429 |
aatatacaaggagtaaactaagtataaaataaataaccttttttgcttcatgtaactgcaagccaccaaagtgcaatgaataccataatggagctgtaaa |
6232330 |
T |
|
| Q |
116 |
tgagaaagcacttaactgtttgcaagtatatttattgaagaaatctcttcttgtgctgccataccaaaaactaccttctatgaattgga |
204 |
Q |
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| T |
6232329 |
tgagaaagcacttaactgtttgcaagtatatttattgaagaggcctcttcttgtgttgccataccaaaaactaccttctatgaattgga |
6232241 |
T |
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