View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_51 (Length: 203)
Name: NF17515_low_51
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_51 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 3681278 - 3681462
Alignment:
| Q |
16 |
aatgatcgaaaacatctctagggagcacccatagagacaggcacaccccactctaccaactcccaatcctccgacaccaagactctatcaattctactca |
115 |
Q |
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| T |
3681278 |
aatgatcggaaacatctctagggagcacccatagagacatgcacaccccac---accaactcccaatcctccgacatcaagactctatcaattctactca |
3681374 |
T |
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| Q |
116 |
tagccaccccattagaatggaaacaagtaaaatttgtaccaagaggattaagatcttccaagactatattgtcaatgaaatcattaaa |
203 |
Q |
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| T |
3681375 |
tagccaccccattagaatggaaacaagtaaacttcgtaccaagcggattaagatcttccaagagtatattgtcaatgaaatcattaaa |
3681462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 6229260 - 6229104
Alignment:
| Q |
16 |
aatgatcgaaaacatctctagggagcacccatagagacaggcacaccccactctaccaactcccaatcctccgacaccaagactctatcaattctactca |
115 |
Q |
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| T |
6229260 |
aatgatcgaaaacgtctctaggaagcacccataaagac-ggcacacccca---taccaactcccaatcttccgacaccaagactctatcaattctactca |
6229165 |
T |
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| Q |
116 |
tagccaccccattagaatggaaacaagtaaaatttgtaccaagaggattaagatcttccaa |
176 |
Q |
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| T |
6229164 |
tagccaccccgttagaatggaaccacgtgaacttcctaccaagcggattttgatcttccaa |
6229104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 44161712 - 44161663
Alignment:
| Q |
97 |
actctatcaattctactcatagccaccccattagaatggaaacaagtaaa |
146 |
Q |
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| T |
44161712 |
actcgatcaattctactcatagataccccattaggatggaaccaagtaaa |
44161663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 55350843 - 55350779
Alignment:
| Q |
70 |
accaactcccaatcctccgacaccaagactctatcaattctactcatagccaccccattagaatg |
134 |
Q |
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| T |
55350843 |
accaactcccaatcctccgacaccaagactctatcaattctactcatggccaccccattagaatg |
55350779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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