View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_52 (Length: 202)
Name: NF17515_low_52
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 1e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 48446524 - 48446390
Alignment:
| Q |
53 |
ccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataatat |
152 |
Q |
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| T |
48446524 |
ccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataatat |
48446425 |
T |
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| Q |
153 |
attttacaaatttgaactcgtattctgtgcctatg |
187 |
Q |
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| T |
48446424 |
attttacaaatttgaactcgtattctgtgcctatg |
48446390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 13464524 - 13464655
Alignment:
| Q |
53 |
ccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataatat |
152 |
Q |
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| T |
13464524 |
ccccttgagcatgaagatagtttcagcgacatttggtacttttcaaggcaggtactcttaattgtcatggtttctagtacgtttgaatgctgcataatat |
13464623 |
T |
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| Q |
153 |
attttacaaatttgaactcgtattctgtgcct |
184 |
Q |
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| T |
13464624 |
attttgcaaattcaaactcatattttgtgcct |
13464655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 14349652 - 14349782
Alignment:
| Q |
53 |
ccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataatat |
152 |
Q |
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| T |
14349652 |
ccccttgagcatgaagatagtttcagcgacatttggtacttttcaaggcaggtactcttaattgtcatggtttctagtacttttgaatgctgcataatat |
14349751 |
T |
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| Q |
153 |
attttacaaatttgaactcgtattctgtgcc |
183 |
Q |
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| T |
14349752 |
attttgcaaattcaaactcatattttgtgcc |
14349782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 7174840 - 7174898
Alignment:
| Q |
112 |
aattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatttgaact |
170 |
Q |
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| T |
7174840 |
aattgccatggtctctagtacattagcattctgcataatatattttgcaaatttgaact |
7174898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 38489970 - 38490101
Alignment:
| Q |
53 |
ccccttgtgcatgaagataatttcagtttcattcggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataatat |
152 |
Q |
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|||||| || ||||| ||||||||| | || | |||| |||||||||||| | ||||||||| |||||||||| ||||| |||||||| |||||||||| |
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| T |
38489970 |
ccccttatgtatgaatataatttcactaacacttggtccttttcaaggcagtttctctgaattttcatggtctctagtacctttgaatggtgcataatat |
38490069 |
T |
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| Q |
153 |
attttacaaatttgaactcgtattctgtgcct |
184 |
Q |
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||| | |||| | |||||| | || ||||||| |
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| T |
38490070 |
attctgcaaaatcgaactcatgttttgtgcct |
38490101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 43099368 - 43099309
Alignment:
| Q |
105 |
tactctgaattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatt |
164 |
Q |
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| T |
43099368 |
tactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt |
43099309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 47367730 - 47367781
Alignment:
| Q |
112 |
aattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaat |
163 |
Q |
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| T |
47367730 |
aattgtcatggtctctagtacttttgaatgttgcacaatatattttgcaaat |
47367781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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