View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_6 (Length: 488)
Name: NF17515_low_6
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 219 - 477
Target Start/End: Complemental strand, 32848019 - 32847761
Alignment:
| Q |
219 |
gtatttatagaaagttcattattcaacaacagattgattgaactcacagaaactgcaataatagtagtataactcatgatgaaaatctgaatgaacacat |
318 |
Q |
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| T |
32848019 |
gtatttatagaaagttcattattcaacaacagattgattgaactcacagaaactgcaataatagtagtataactcatgatgaaaatctgaatgaacacat |
32847920 |
T |
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| Q |
319 |
agacaatacctgcaaatattagatagatatattttagaaatgaaaacagaaatcactcaaactcattgtgaaaatcagcacggtatagaactgtagatca |
418 |
Q |
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| T |
32847919 |
agacaatacctgcaaatattagatagatatattttagaaatgaaaacagaaatcactcaaactcattgtgaaaatcagcacggtatagaactgtagatca |
32847820 |
T |
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| Q |
419 |
agaacaacttactggagacattcagaaccaccaccgtcgtggcatcaggtatattcttc |
477 |
Q |
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| T |
32847819 |
agaaaaacttactggagaccgtcagaaccaccaccgtcgcggcatcaggtatattcttc |
32847761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 32848217 - 32848093
Alignment:
| Q |
21 |
actcacgtgtgtaaagtaagtaacaaaatttaagccagtaaaatacctgctgctggtggattgacttgaa-ccatcacaaataactcaatgccatatttg |
119 |
Q |
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| T |
32848217 |
actcacgtgtgtaaagtaaggaacaaaatttaagccagtaaaatacctgctggtggtggatcgacttgaacccatcagaaataactcaatgccatatttg |
32848118 |
T |
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| Q |
120 |
accctagaaagcaaaacacgtactt |
144 |
Q |
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| T |
32848117 |
accctagaaagcaaaacacgtactt |
32848093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 32853973 - 32853859
Alignment:
| Q |
23 |
tcacgtgtgtaaagtaagtaacaaaatttaagccagtaaaatacctgctgctggtggattgacttgaaccatcacaaataactcaatgccatatttgacc |
122 |
Q |
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| T |
32853973 |
tcacgtgcgtaaagtacctatcaaaattttaaccagtaaaatacctgcta---gtggatcgact-gaatcatcacaaacaacccaatgccatatttgacc |
32853878 |
T |
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| Q |
123 |
ctagaaagcaaaacacgta |
141 |
Q |
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| T |
32853877 |
ctagaaagcaaaacacgta |
32853859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 420
Target Start/End: Complemental strand, 32856695 - 32856607
Alignment:
| Q |
333 |
aatattagatagatatattttagaaatg-aaaacagaaatcactcaaactcattgtgaaaatcagcacggtatagaactgtagatcaag |
420 |
Q |
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||||||||||||||||| || |||||| ||||||||||||| ||| | |||| ||||||||||||| || || || ||||||||||| |
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| T |
32856695 |
aatattagatagatatacattcgaaatggaaaacagaaatcagtcatattcatcatgaaaatcagcacagtgtataagtgtagatcaag |
32856607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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