View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17515_low_7 (Length: 479)
Name: NF17515_low_7
Description: NF17515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17515_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 44 - 378
Target Start/End: Complemental strand, 43570421 - 43570084
Alignment:
| Q |
44 |
aaaacagcagctgcaacagaaaaacatcactaaaatccacacccaataacagcgcccagaaagnnnnnnnnnccaccacaccatcccaactaaacactcc |
143 |
Q |
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| T |
43570421 |
aaaacagcagctgcaacagaaaaacatcactaaaatccacacccaataacagcgcccagaaagaaaaaaaaaccaccacagcatcccaactaaacactcc |
43570322 |
T |
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| Q |
144 |
aaaacacagccgctagaacacctggccagacacaaaaactaccgatcccaacaaaacggccattataaccgaacccaacctcaccaccaccttcctatag |
243 |
Q |
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| T |
43570321 |
aaaacacagccgctagaacacctggccagacacaaaaactaccgatcccaacaaaacggccattataaccaaacccaacctcaccaccaccttcctatag |
43570222 |
T |
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| Q |
244 |
ctacttcaaaac---tcctagctaccctcacaaggcaatcctttggattccaacaccattcatggtagacgcatgccaggatataaatacgattcaacgt |
340 |
Q |
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| T |
43570221 |
ctacttcaaaactcctcctagctaccctcacaaggcaatcctttggattccaacaccattcatggtagacgcatgccaggatataaatacgattcaacgt |
43570122 |
T |
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| Q |
341 |
ccatcgccaagacaataccttgatttcttccacaatat |
378 |
Q |
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| T |
43570121 |
ccatcgccaagacaataccttgatttcttccacaatat |
43570084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 31171419 - 31171454
Alignment:
| Q |
268 |
tcacaaggcaatcctttggattccaacaccattcat |
303 |
Q |
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| T |
31171419 |
tcacaaggcaatccttttgattccaacaccattcat |
31171454 |
T |
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