View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_high_16 (Length: 351)
Name: NF17516_high_16
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 21307290 - 21307634
Alignment:
| Q |
1 |
ttttcacatcctttgccacataccttgatttattatcctttcttcccattaatagggttttttggagctttttgaagacattattcttgagcttcaaaat |
100 |
Q |
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| T |
21307290 |
ttttcacatcctttgcctcataccttgatttattatcctttcttcccaataatagggttttttggagctttttgaagacattattcttgagcttcaaaat |
21307389 |
T |
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| Q |
101 |
tccacctacaacaaccattttgattacaagttgtttttaagatgtatatgtgtacaagatagatttgttttatgatg-tttcattaatttaatatgctta |
199 |
Q |
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| T |
21307390 |
tccacctacaacaaccattttgatttctagttgtttttaagatgtatatgtgttcaagatagatttgttttatgatgatttgatgaatttaatatgctta |
21307489 |
T |
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| Q |
200 |
atatttatagtgttcttgttaacaaagacacaaataatttggccccatatcaagttagaacataccgaacataagtgaaagcgaaatatagcaattcatg |
299 |
Q |
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| T |
21307490 |
atatttatagtgttcttgttaacaaagacacaaataatttggccccatatcaagttagaacataccgaacataagtgaaagcgaaatatagcaattcatg |
21307589 |
T |
|
| Q |
300 |
tatgtgatcggtgcactgttttcgaacgaacattttatattcttg |
344 |
Q |
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| T |
21307590 |
tatgtgatcggtgcactgttttcgaacgaacattttattttcttg |
21307634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 21297871 - 21298145
Alignment:
| Q |
1 |
ttttcacatcctttgccacataccttgatttattatcctttcttcccattaatagggttttttggagctttttgaagacattattcttgagcttcaaaat |
100 |
Q |
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|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
21297871 |
ttttcacatcctttgccacataccttgatttataatcatttcttcccattaatagggttttgtggagcttaatgaagacattattcttgagcttcaaaat |
21297970 |
T |
|
| Q |
101 |
tccacctacaacaaccattttgattacaagttgtttttaagatgtatatgtgtacaagatagatttgttttatgatg-tttcattaatttaatatgctta |
199 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||||| |
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| T |
21297971 |
tccacctacaacaaccattttgatttctagttgtttttaagatgtatatgtgttcaagatagatttgttttatgatgatttgatcaatttaatatgcttt |
21298070 |
T |
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| Q |
200 |
atatttatagtgttcttgttaacaaagacacaaataattt-ggccccatatcaagttagaacataccgaacataa |
273 |
Q |
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||||||||||||| ||| ||||||||||||| ||| |||| ||| | |||| ||||||||| ||||||||||||| |
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| T |
21298071 |
atatttatagtgtgcttcttaacaaagacactaattatttgggcactatataaagttagaatataccgaacataa |
21298145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 21298171 - 21298222
Alignment:
| Q |
284 |
aatatagcaattcatgtatgtgatcggtgcactgttttcgaacgaacatttt |
335 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||| || ||||| |
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| T |
21298171 |
aatatagcaattcatgtatgtgttcggtacagtgttttcgaaccaatatttt |
21298222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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