View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17516_high_20 (Length: 324)

Name: NF17516_high_20
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17516_high_20
NF17516_high_20
[»] chr1 (2 HSPs)
chr1 (16-225)||(50235105-50235314)
chr1 (222-308)||(50235634-50235720)
[»] chr3 (2 HSPs)
chr3 (224-308)||(39463172-39463256)
chr3 (224-308)||(37151511-37151595)
[»] chr5 (1 HSPs)
chr5 (224-308)||(6640085-6640169)
[»] chr2 (1 HSPs)
chr2 (224-308)||(42402285-42402369)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 50235105 - 50235314
Alignment:
Q  16 caaagccctgcaaagaacgtaaaggagcgcggacctgttgaggaagttttgatccagttgtacgcacagttttcagagaagaaatcaggacttgtgaagc 115  Q
    ||||||||| |||||||||| | |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50235105 caaagccctacaaagaacgtgatggagcgcgaacctgttgagaaagttttgatctagttgtacgcacagttttcagagaagaaatcaggacttgtgaagc 50235204  T
Q  116 cgattttttgccagattgtgatggagtatcgacactcgcgaacacagtgcaagaatgtttcgtctttctcttcacatctcgagcaaatagcagaatttgc 215  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||    
T  50235205 cgattttttgctagattgtgatggagtatcgacagtcgcgaacacagtgcaagaaggtttcatctttctcttcacatatcgagcaaatagcagaatttgc 50235304  T
Q  216 gatgtgtctg 225  Q
    ||||||||||    
T  50235305 gatgtgtctg 50235314  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 222 - 308
Target Start/End: Complemental strand, 50235720 - 50235634
Alignment:
Q  222 tctggtttagcaattggagttctcatggtttacttggttcccttgtccctatcattgacatccacgacctccacctcactatcaaag 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50235720 tctggtttagcaattggagttctcatggtttacttggttcccttgtccctatcattgacatccacgacctccacctcactgtcaaag 50235634  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 39463172 - 39463256
Alignment:
Q  224 tggtttagcaattggagttctcatggtttacttggttcccttgtccctatcattgacatccacgacctccacctcactatcaaag 308  Q
    ||||| ||||||||||| |||||||| |  ||||||||| | |||||||||||||||||||| ||  |||| |||||||||||||    
T  39463172 tggttcagcaattggagctctcatggctaccttggttccttggtccctatcattgacatccatgatatccatctcactatcaaag 39463256  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 37151595 - 37151511
Alignment:
Q  224 tggtttagcaattggagttctcatggtttacttggttcccttgtccctatcattgacatccacgacctccacctcactatcaaag 308  Q
    ||||| || |||||||| |||||||| |  ||||||||  | |||||||||||||||||||| ||  |||| |||||||||||||    
T  37151595 tggttcagtaattggagctctcatggctaccttggttcattggtccctatcattgacatccatgatatccatctcactatcaaag 37151511  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 6640169 - 6640085
Alignment:
Q  224 tggtttagcaattggagttctcatggtttacttggttcccttgtccctatcattgacatccacgacctccacctcactatcaaag 308  Q
    ||||| || |||||||| |||||||| |  ||||||||| |  ||||||||||||||||||||||| |||| |||||| ||||||    
T  6640169 tggttcagtaattggagctctcatggctaccttggttccttgatccctatcattgacatccacgacatccatctcactgtcaaag 6640085  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 42402369 - 42402285
Alignment:
Q  224 tggtttagcaattggagttctcatggtttacttggttcccttgtccctatcattgacatccacgacctccacctcactatcaaag 308  Q
    ||||| || |||||||| |||||||| |  ||||||||  | |||||||||||||||||||||||  |||| |||||| ||||||    
T  42402369 tggttcagtaattggagctctcatggctaccttggttcattggtccctatcattgacatccacgatatccatctcactgtcaaag 42402285  T

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