View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17516_high_21 (Length: 318)

Name: NF17516_high_21

Description: NF17516

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17516_high_21

[»] chr5 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 108; E-Value: 3e-54

Query Start/End: Original strand, 16 - 135

Target Start/End: Complemental strand, 10330538 - 10330419

Alignment:

Q	16	attattctgcaatgaaatgttacacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctca	115	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10330538	attatcctgcaatgaaatattagacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctca	10330439	T

Q	116	acaccaatacctaactacat	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10330438	acaccaatacctaactacat	10330419	T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 197 - 266

Target Start/End: Complemental strand, 24781448 - 24781379

Alignment:

Q	197	tttaccacctccccatctagccacgactcgtgtgaaaacaacgtcttactaccattttctattttattaa	266	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	24781448	tttaccacctccccacctagccacgactcatgccaggacaacgcttcactaccattttctattttcttaa	24781379	T

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