View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_high_24 (Length: 292)
Name: NF17516_high_24
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 2608417 - 2608147
Alignment:
| Q |
11 |
ttattctaccttggaattcaatgaacctgcatttgatgaatatgatccaacaccttatggtggtggatatgacattgattcaacctatggtaagcctctt |
110 |
Q |
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| T |
2608417 |
ttattctaccttggaattcaatgaacctgcatttgatgaatatgatccaacaccttatggtggtggatatgacattgattcaacctatggtaagcctctt |
2608318 |
T |
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| Q |
111 |
gcaccttcagataaaatttgctatcctcgttctggttctggttcaattccaactccaattccaattccaattc------caatacctcttcctgtggaag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2608317 |
gcaccttcagataaaatttgctatcctcgttctggttcaattccaactccaattccaattccaattccaattccaattccaatacctcttcctgtggaag |
2608218 |
T |
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| Q |
205 |
aggcaaaacttgatgagaaagtaatcaaaccgcctcaaaatgaaaccaaagaccaaaatgctgtagaaaag |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608217 |
aggcaaaacttgatgagaaagtaatcaaaccgcctcaaaatgaaaccaaagaccaaaatgctgtagaaaag |
2608147 |
T |
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