View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_high_29 (Length: 260)
Name: NF17516_high_29
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 45551627 - 45551400
Alignment:
| Q |
19 |
ttacaatcatactatatctgaaagggcagactgaaaagttcaaacactgctatgctataatctacaaaacttccagattaattggaacatcttcattacc |
118 |
Q |
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| T |
45551627 |
ttacaatcatactatatctgaaagggcagactgaaaagttcaaacactgctatgctataatctacaaaacttccagattaattggaacatcttcattacc |
45551528 |
T |
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| Q |
119 |
ttaaattgcattcgtcgtcgttttcctggcaactttcacaccagtacccatcacccatgctttcagtaagtttcttgttgcaagtc-tacaggcacaata |
217 |
Q |
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| T |
45551527 |
ttaaattg-tttcgtcgtcgttttcctggaaactttcacaccagtacccatcacccatgctttcagtaagtttcttgttgcaagtcttacaggcacaata |
45551429 |
T |
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| Q |
218 |
ccacatctcctgatctggccttatgaaac |
246 |
Q |
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| T |
45551428 |
ccacatctcctgatctggccttatgaaac |
45551400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 45547043 - 45546846
Alignment:
| Q |
49 |
ctgaaaagttcaaacactgctatgctataatctacaaaacttccagattaattggaacatcttcattaccttaaattgcattcgtcgtcgttttcctggc |
148 |
Q |
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| T |
45547043 |
ctgaaaggttcaaatactgctatgctaaaatctacaaaactaccag-ttaattggaccagttacattacctgaagttgcactctgcatcatttttctggc |
45546945 |
T |
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| Q |
149 |
aactttcacaccagtacccatcacccatgctttcagtaagtttcttgttgcaagtc-tacaggcacaataccacatctcctgatctggccttatgaaac |
246 |
Q |
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| T |
45546944 |
aactttcacaccagtacccagcatccatgtcttcagtaactttcttgttacaagtcttacaggcacgataccacattgcctggtctgcctttatgaaac |
45546846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 50134367 - 50134443
Alignment:
| Q |
86 |
aacttccagattaattggaacatcttcattaccttaaattgcattcgtcgtcgttttcctggcaactttcacaccag |
162 |
Q |
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| T |
50134367 |
aacttccagattgattgggacaacttcattaccttaaattgcattcttcattgtttttctcgcaactttcacaccag |
50134443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 39915872 - 39916044
Alignment:
| Q |
56 |
gttcaaacactgctatgctataatctacaaaa-cttccagattaattggaacatcttcattaccttaaattgcattcgtcgtcgttttcctggcaacttt |
154 |
Q |
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| T |
39915872 |
gttcaaatactactatgctatagcctaaaaaaacttccaaattaattgagacaacttcattaccttaaattgcattcttcatcgtttttagtgcaactct |
39915971 |
T |
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| Q |
155 |
cacaccagtacccatcacccatgctttcagtaagtttcttgttgcaagtc-tacaggcacaataccacatctcctgatct |
233 |
Q |
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| T |
39915972 |
tacaccag-------cacccgtgctttcagtagatttcttgttgcaagtcttacatgcaggatactacatttcctgatct |
39916044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 3172159 - 3172089
Alignment:
| Q |
176 |
tgctttcagtaagtttcttgttgcaagtc-tacaggcacaataccacatctcctgatctggccttatgaaa |
245 |
Q |
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| T |
3172159 |
tgctttcagtaactttcttattgcaagtcttgcatgcacaatactacatttcctgatctgaccctatgaaa |
3172089 |
T |
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