View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_high_30 (Length: 244)
Name: NF17516_high_30
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 52726365 - 52726132
Alignment:
| Q |
2 |
aatcctcaaatgaaatttagctaaaggagtattacaattagataata---tacaccgatgaatacaaacaatgccattgcgaagtaaccatatagagcaa |
98 |
Q |
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| T |
52726365 |
aatcctcaaatgaaatttagctaaaggagtattacaattagataataatatacaccgatgaatacaaacaatgccattgcgaagtaaccatatagagcaa |
52726266 |
T |
|
| Q |
99 |
aggtattaagaaactattacttacgaattggagaattatatattatttgttgaagttcctaataacttgcccttgcaaatcaattgaccgaaagttttgg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52726265 |
aggtattaagaaactattacttacgaattggagaattatatattatttgttgaagttcctaataacttgcccttgtaaatcaattgaccgaaagttttga |
52726166 |
T |
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| Q |
199 |
gatgcactaaatcttagataaaaagaacaagtat |
232 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52726165 |
gatgcactaaatcttagataaaaagaacaagtat |
52726132 |
T |
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