View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17516_high_33 (Length: 224)
Name: NF17516_high_33
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17516_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 49770226 - 49770012
Alignment:
| Q |
1 |
tgctggtccaactagcatctcacctgtagctcatagtcacattttgagtttcacaaaacacaaatgaaaacataaacacttcatttcatattagtattac |
100 |
Q |
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| T |
49770226 |
tgctggtccaactagcatctcacctgtagctcatagtcacatcttgagtttcacaaaacacaaatgaaaacataaacacttcatttcatattagtattac |
49770127 |
T |
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| Q |
101 |
acagataatacgatttatggttttaccagttgtgactctcttcttttgtccacccgaaatacctcgaatcatgtcatctcctaccatggtatcagcacaa |
200 |
Q |
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| T |
49770126 |
acagataatgagatttatggttttaccagttgtgactctcttcttttgtccacccgaaatacctcgaatcatgtcatctcctaccatggtatcagcacaa |
49770027 |
T |
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| Q |
201 |
acatctagtcctaaa |
215 |
Q |
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||||||||||||||| |
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| T |
49770026 |
acatctagtcctaaa |
49770012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 3828457 - 3828675
Alignment:
| Q |
2 |
gctggtccaactagcatctcacctgtagctcatagtcacatt------ttgagtttcacaaaacacaaatgaaaacataaacacttcatttcatattagt |
95 |
Q |
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||||||||||||||||||| || ||||| |||||||| |||| |||||||| | |||||||||||||||| || ||||||| |||| ||| | | |
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| T |
3828457 |
gctggtccaactagcatctaacatgtagttcatagtcccattcccatcttgagttttataaaacacaaatgaaaatatgaacactttctttcttataaat |
3828556 |
T |
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| Q |
96 |
attacacagataatacgatttatggttttaccagttgtgactctcttcttttgtccacccgaaatacctcgaatcatgtcatctcctaccatggtatcag |
195 |
Q |
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| T |
3828557 |
actacagagataatgagatttatggttttaccagttctaactctctt-ttcggtccactcaaagtacctcgaatcatgtcaccccctaccatggtatcag |
3828655 |
T |
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| Q |
196 |
cacaaacatctagtcctaaa |
215 |
Q |
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|||||| ||| ||||||||| |
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| T |
3828656 |
cacaaaaatccagtcctaaa |
3828675 |
T |
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