View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17516_high_34 (Length: 222)

Name: NF17516_high_34
Description: NF17516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17516_high_34
NF17516_high_34
[»] chr1 (2 HSPs)
chr1 (10-111)||(4325353-4325454)
chr1 (111-204)||(4328905-4328998)
[»] chr3 (1 HSPs)
chr3 (133-165)||(48225246-48225278)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 4325353 - 4325454
Alignment:
Q  10 catcatcattaggtaagttcagtgtgaaaacaagatcatcatggcgcattaattgtacatttgtgtgtaaagctctatttgggccactctcttatgaatc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4325353 catcatcattaggtaagttcagtgtgaaaacaagatcatcatggcacattaattgtacatttgtgtgtaaagctctatttgggccactctcttatgaatc 4325452  T
Q  110 aa 111  Q
    ||    
T  4325453 aa 4325454  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 4328905 - 4328998
Alignment:
Q  111 atgccatgccatcatgcactgctgccccaccactactttttagtggaatcaatagcattgcacattcccctagccacaccatgtgtgacaaaac 204  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328905 atgccatgccatcatgcaccgctgccccaccactactttttagtggaatcaatagcattgcacattcccctagccacaccatgtgtgacaaaac 4328998  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 48225246 - 48225278
Alignment:
Q  133 tgccccaccactactttttagtggaatcaatag 165  Q
    |||||||||||||||||||| ||||||||||||    
T  48225246 tgccccaccactactttttattggaatcaatag 48225278  T

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